Welcome to the SEED Viewer - a read-only browser of the curated SEED data.
For more information about The SEED please visit theSEED.org. For daily updates on SEED activity visit the Daily SEED
The Annotation Clearinghouse offers a mapping of genes which are identical in sequence except for the start region (due to differences in start calling).
Set function to
hypothetical protein
from original annotations
11/20/2009
rapid_propogation
Set function to
Threonine dehydratase, catabolic (EC 4.3.1.19)
based on FIGfams
4/12/2014
annotation_transfer
Migrating 2 annotations for fig|393305.7.peg.4435 from core seed (including function assignment) at 2014-04-12 01:15:17
4/12/2014
SvetaG
Migrate assignment from Threonine dehydratase, catabolic (EC 4.3.1.19) to Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)
4/12/2014
SvetaG
Assignment projected from fig|83333.1.peg.3063 based on tree proximity
4/12/2014
SvetaG
Set master function to
Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17)
9/10/2014
annotation_transfer
Migrating 2 annotations for fig|393305.7.peg.4435 from core seed (including function assignment) at 2014-09-11 01:15:11
9/10/2014
SvetaG
Migrate assignment from Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) to pyridoxal-phosphate dependent enzyme family protein
9/10/2014
SvetaG
Assignment projected from fig|400668.6.peg.3145 based on tree proximity
9/11/2014
SvetaG
Set master function to
pyridoxal-phosphate dependent enzyme family protein
8/5/2016
annotation_transfer
Migrating 1 annotations for fig|393305.7.peg.4435 from core seed (including function assignment) at 2016-08-06 01:15:05
8/5/2016
VeronikaV
Migrate assignment from pyridoxal-phosphate dependent enzyme family protein to Threonine dehydratase biosynthetic (EC 4.3.1.19)
8/6/2016
VeronikaV
Set master function to
Threonine dehydratase biosynthetic (EC 4.3.1.19)
This feature is part of a subsystem
In Threonine anaerobic catabolism gene cluster its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In Threonine degradation its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In dcernst RidA Cysteine phenotype its role is Threonine dehydratase, catabolic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In TN RidA proteins its role is Threonine dehydratase, catabolic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In dcernst RidA proteins its role is Threonine dehydratase, catabolic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In Glycine and Serine Utilization its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In Branched-Chain Amino Acid Biosynthesis its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In TN RidA: all subgroups, 981 genomes PLP its role is Threonine dehydratase, catabolic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In TN RidA: all subgroups, 981 genomes PLP its role is L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17). However, the functionality of this subsystem has not yet been classified for this organism.
In RidA proteins copy with new groups its role is Threonine dehydratase, catabolic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In RidA proteins its role is Threonine dehydratase, catabolic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In All RidA Proteins its role is Threonine dehydratase biosynthetic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In Propionate production HGM its role is Threonine dehydratase biosynthetic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In Leucine, Isoleucine, and Valine biosynthesis PanGenomes its role is Threonine dehydratase biosynthetic (EC 4.3.1.19). However, the functionality of this subsystem has not yet been classified for this organism.
In Branched-Chain Amino Acid Biosynthesis its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In Glycine and Serine Utilization its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In Threonine anaerobic catabolism gene cluster its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
In Threonine degradation its role is Threonine dehydratase, catabolic (EC 4.3.1.19).
Compare Regions For fig|393305.7.peg.4435
The chromosomal region of the focus gene (top) is compared with four similar organisms. The graphic is centered on the focus gene, which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Genes whose relative position is conserved in at least four other species are functionally coupled and share gray background boxes. The size of the region and the number of genomes may be reset. Click on any arrow in the display to refocus the comparison on that gene. The focus gene always points to the right, even if it is located on the minus strand.
