Annotation Overview for fig|351746.4.peg.96 in Pseudomonas putida F1:
Tryptophan synthase beta chain (EC 4.2.1.20)

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current assignmentTryptophan synthase beta chain (EC 4.2.1.20)EC Number 4.2.1.20
taxonomy id351746contig
internal linksgenome browser | feature evidence | sequenceACH [?]show essentially identical genes
annotation historyrun tool
FigFamFIG00116323CDD linkshow cdd
PATtyfamPGF_00062027: Tryptophan synthase beta chain (EC 4.2.1.20)
PLF_286_00000341: Tryptophan synthase beta chain (EC 4.2.1.20)
alignments and trees5 alignments and trees
edit functional roleTryptophan synthase beta chain (EC 4.2.1.20)
aliases
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This feature is part of a subsystem
  • In Tryptophan synthesis Chlora tempo its role is Tryptophan synthase beta chain (EC 4.2.1.20).
  • In Tryptophan synthesis its role is Tryptophan synthase beta chain (EC 4.2.1.20).
  • In Chorismate: Intermediate for synthesis of Tryptophan, PAPA antibiotics, PABA, 3-hydroxyanthranilate and more. its role is Tryptophan synthase beta chain (EC 4.2.1.20).
  • In Folate Tryp Chlamydiae its role is Tryptophan synthase beta chain (EC 4.2.1.20).
  • In Tryptophan biosynthesis HGM New its role is Tryptophan synthase beta chain (EC 4.2.1.20). However, the functionality of this subsystem has not yet been classified for this organism.
  • In Tryptophan synthesis its role is Tryptophan synthase beta chain (EC 4.2.1.20).

    • Reasons for Current Assignment

    We have assigned the function "Tryptophan synthase beta chain (EC 4.2.1.20)" to the encoded protein. The protein occurs in 1 subsystem: "Tryptophan synthesis". In "Tryptophan synthesis", it appears to play a functional role that we have not associated with any other gene, and it occurs in close proximity on the chromosome with another gene from the same subsystem. The function of genes having the same functional roles have been described in Acinetobacter sp. (2211532, 2299982), Caulobacter crescentus (2828322), Streptomyces coelicolor (10361288, 9097426), Synechocystis sp. (8159786), Pasteurella multocida (8581158), Vibrio parahaemolyticus (1773058) and Thermococcus kodakarensis (10628865). These are homologous proteins which implement the same function.

    Compare Regions For fig|351746.4.peg.96

    The chromosomal region of the focus gene (top) is compared with four similar organisms. The graphic is centered on the focus gene, which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Genes whose relative position is conserved in at least four other species are functionally coupled and share gray background boxes. The size of the region and the number of genomes may be reset. Click on any arrow in the display to refocus the comparison on that gene. The focus gene always points to the right, even if it is located on the minus strand.