svr_translations_of

Get translations from ids

Usage

    svr_translations_of [-c column] [-fasta] [-function] [-genome] < ids

Command-Line Options

-a

Include assigned functions in fasta header, or as penultimate column in tab delimited output. Same as -function

-c column

Take ids from specified column of tab delimited input

-f

Output in fasta format, not tab delimited columns. Same as -fasta

-fasta

Output in fasta format, not tab delimited columns.

-function

Include assigned functions in fasta header, or as penultimate column in tab delimited output.

-g

Include genome name in square brackets at end of function. Same as -genome

-genome

Include genome name in square brackets at end of function.

Examples:

Default output of tab delimited pairs of id and sequence for E. coli K12 genome:

 svr_all_features 83333.1 peg | svr_translations_of > id_tab_seq

FASTA format output with function and genome name:

 svr_all_features 83333.1 peg | svr_translations_of -fasta -function -genome > annotated_fasta

FASTA format output with function and genome name, using short options run together:

 svr_all_features 83333.1 peg | svr_translations_of -afg > annotated_fasta