svr_summarize_protein_families Report-on-Sets Report-on-Genomes Report-on-Intersections

Write out three simple reports relating to a proposed set of protein families.

Introduction

If you are constructing a set of protein families for a set of genomes (say, a set of genomes that are the input of an attempt to form a "pangenome"), it is useful to get some summaries on how well the genes were separated into families. This little program writes three reports: Report-on-Sets summarizes the number of sets of different sizes, Report-on-Genome is a report that allows you to see the distribution of set sizes containing genes from each genome, and Report-on-Intersections shows the number of sets in common between all pairs of genomes.

Output

The outpt files have the following formats:

    Set-Report is a two-column table containing ['Set','Size-of-Set']

    Report-on-Genomes is a 3-column table: ['Genome','Size of Set','Number Sets']

    Report-on-Intersections' is a 3-column table: ['Genome1','Genome2','Number of Common Sets']

These are meant to be used as input to a spreadsheet or some other tool for trying to analyze how well the correspondences could be formed.