svr_summarize_MG_output

Introduction

    svr_summarize_MG_output  < output.from.svr_assign_to_dna_using_figfams

This simple program produces two summaries: one of the functions identified and one of the OTUs identified. We represent OTUs with a representative organism. The function summary is sent to stdout, while the OTU summary is sent to stderr.

Output Format

The function summary written to stdout is a 3-column table:

• the number of hits against the function
• the fraction of the total hits this represents
• the function

The OTU summary is also a 3-column table:

• the number of hits against that appear to unquely identify an OTU
• the fraction of the total hits this represents
• a representative organism for the OTU