svr_subsystem_genomes

    svr_subsystem_genomes "subsystem ID" >sub_data.tbl

Output the genomes of a subsystem.

This script takes as input a subsystem name on the command line and produces a tab-delimited file of all the genomes that use the subsystem and their variant codes. Each line of the file will contain the genome ID first and then the variant code. The output will be produced on the standard output.

Note that because the subsystem name likely contains spaces, it will need to be enclosed in quotes on the command-line.

Command-Line Options

url

The URL for the Sapling server, if it is to be different from the default.

all

If specified, all genomes associated with the subsystem will be included in the output. Normally, only genomes that completely implement the subsystem will be listed.