svr_ss_classes

    svr_ss_classes -s genome >classes.tbl

List the classifications for a specified subsystem or for all subsystems in a file.

This script takes as input one or more subsystem names and for each on appends the classification hierarchy for that subsystem. In the current database, the hierarchy can be anything from an empty list (0) to two entries.

The input should be a tab-delimited file with subsystem IDs in the last column. The output file will have additional columns containing the classifications, in order from the largest to the most detailed.

This is a pipe command. The input is from the standard input and the output is to the standard output.

Command-Line Options

url

The URL for the Sapling server, if it is to be different from the default.

c

Index (1-based) of the input column containing the subsystem ID. If omitted, the last column of the input will be used.

s

ID of a subsystem. If this option is specified, then the output file will contain only one line (for the one specified subsystem). The standard input will not be read.