Documentation read from 04/17/2019 22:07:27 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_reactions_in_model.



Takes as input a table containing model IDs and adds a column giving a reaction in the model. Since each model contains hundreds of reactions, the output file will be extremely large compared to the input file.

------ Example: svr_all_models | svr_reactions_in_model > table.with.reactions

would produce a 3-column table: [genomeID, modelID,reactionID]


Command-Line Options

-c Column

This is used only if the column containing reaction IDs is not the last.

Output Format

The standard output is a tab-delimited file. It consists of the input file with two extra columns (distance and connected reaction).


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