svr_members_of_otu

    svr_members_of_otu <genome_ids.tbl >genome_data.tbl

For each incoming genome ID, return the genome ID and name of each genome in the same organism taxonomic unit.

This script takes as input a tab-delimited file with genome IDs at the end of each line. For each genome ID, multiple output lines are produced containing the name and ID of each other genome in the same OTU. It can optionally take as input a list of genome IDs specified as command-line parameters.

This is a pipe command: the input is taken from the standard input and the output is to the standard output.

Command-Line Options

url

The URL for the Sapling server, if it is to be different from the default.

c

Column index. If specified, indicates that the input IDs should be taken from the indicated column instead of the last column. The first column is column 1.