Documentation read from 04/17/2019 22:07:27 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_md5_of_prot.
Get md5s of protein-encoding genes
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Example:
svr_all_features 3702.1 peg | svr_md5_of_prot
would produce a 2-column table. The first column would contain PEG IDs for genes occurring in genome 3702.1, and the second would contain the md5 values of the encoded genes.
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The standard input should be a tab-separated table (i.e., each line is a tab-separated set of fields). Normally, the last field in each line would contain the PEG for which md5s are being requested. If some other column contains the PEGs, use
-c N
where N is the column (from 1) that contains the PEG in each case.
This is a pipe command. The input is taken from the standard input, and the output is to the standard output.
This is used only if the column containing PEGs is not the last.
The standard output is a tab-delimited file. It consists of the input file with an extra column added (the md5 associated with the PEG).