svr_just_ends

Clip off the ends of a set of contigs

Introduction

Example:

    svr_just_ends -ln 500 < contigs > just.ends

Command-Line Arguments

The program is invoked using

    svr_just_ends [-ln=N] < contigs > clipped.ends

where contigs is a fasta file (usually containing DNA)

-ln=N

Take N characters from each end (1000 is the default)

Output

A fasta file of ends of contigs. The IDs will be of the form

    Contig_1_N  (e.g., contig1_1_1000) or
    Contig_x_y  where y is the length of the contig (e.g., contig2_232_1231)