Documentation read from 04/17/2019 22:07:26 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_inconsistent_sets.



Separate out inconsistent sets



    svr_inconsistent_sets < pg.sets 2> >
    svr_inconsistent_sets -s -f assignments < pg.sets 2> >

would write consistent sets to and inconsistent sets to The second form will

    1. strip comments before the comparison
    2. write proposed assignments to the file "assignments".

Using the second form, the include sets corrected by the proposed assignments.


Command-Line Options

-f proposed.assignments

This causes correction of the assignments that can trivially be fixed. The resulting proposed set of assignments gets written to the designated file.

-s [strip comments]

This causes comments to be stripped from functions before the comparisons.

-k [update assignments using kmers - a performance hit]

Output Format

Consistent sets are written to STDOUT, while inconsistent sets get writeen to STDERR.