Documentation read from 04/17/2019 22:07:26 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_genome_of.



Get genome of feature



    svr_all_features 3702.1 peg | svr_genome_of

would produce a 2-column table. The first column would contain PEG IDs for genes occurring in genome 3702.1, and the second would contain 3702.1 (a pretty poor example, I grant)


The standard input should be a tab-separated table (i.e., each line is a tab-separated set of fields). Normally, the last field in each line would contain the PEG for which functions are being requested. If some other column contains the PEGs, use

    -c N

where N is the column (from 1) that contains the PEG in each case.

This is a pipe command. The input is taken from the standard input, and the output is to the standard output.

Command-Line Options

-c Column

This is used only if the column containing PEGs is not the last.

Output Format

The standard output is a tab-delimited file. It consists of the input file with an extra column added (the genome of the feature)