Documentation read from 04/17/2019 22:07:26 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_gap_filled_reactions_and_roles.
Get the reactions and functional roles that were predicted by gap-filling
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Example:
svr_gap_filled_reactions_and_roles -m Seed83333.1 > predicted.reactions.and.roles
would write a 2-column table containing [reaction,role] giving the reactions and roles predicted by gap-filling.
svr_gap_filled_reactions_and_roles < file.of.models
could be used to read the model IDs from the last column of the lines in file.of.models.
------ =head2 Command-Line Options
This parameter can be used to specify a specific model ID. If it is omitted, the model IDs will be read from input lines.
This is used only if the column containing model IDs is not the last.
The standard output is a tab-delimited file. Each line will contain 2 extra tab-separated fields:
reaction-id role