Documentation read from 04/17/2019 22:07:26 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_figfams_to_ids.



    svr_figfams_to_ids [Genome1 Genome2 ... GenomeN] < figfams.tbl > with_pegs.tbl 

List the PEGs for each specified FIGfam ID on STDOUT.

This script takes as input a tab-delimited file with FIGfam IDs at the end of each line. For each FIGfam ID, the PEGs in the FIGfam (restricted to specified Genomes, if present) are returned.

This is a pipe command: the input is taken from the standard input and the output is to the standard output.

Note that because some FIGfams contain multiple PEGs, there may be more output items than input lines.

Command-Line Options


The URL for the Sapling server, if it is to be different from the default.


Column index. If specified, indicates that the input IDs should be taken from the indicated column instead of the last column. The first column is column 1.