Documentation read from 04/17/2019 22:07:26 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_fids_to_locations.
Clusters from protein-encoding genes
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Example:
svr_all_features 3702.1 fid | svr_fids_to_locations svr_all_features 3702.1 fid | svr_fids_to_locations -b
would produce a 3-column table. The first column would contain FID IDs and the second the FID locations. The file would be sorted on the locations. The second version would coallapse multi-region locations into lust the boundaries. ------
The standard input should be a tab-separated table (i.e., each line is a tab-separated set of fields). Normally, the last field in each line would contain the FID for which clusters are being requested. If some other column contains the FIDs, use
-c N
where N is the column (from 1) that contains the FID in each case.
This is a pipe command. The input is taken from the standard input, and the output is to the standard output.
This is used only if the column containing FIDs is not the last.
The standard output is a tab-delimited file. It consists of the input file with an extra column added (the locations of fids)