svr_fc_figfams

    svr_fc_figfams [-MinSc=n] < table_with_ff_column.tbl  > extended_with_scores_and_ffs.tbl

Output the functionally coupled FIGfams By specifying a MinSc, you restrict the output to functionally-coupled FIGfams that co-occur in at least n OTUs.

This script takes as input a tab-delimited file with FIGfam IDs at the end of each line. For each FIGfam ID, the coupling score and FIGfam ID of a functionally coupled FIGfam will be appended to the list.

This is a pipe command: the input is taken from the standard input and the output is to the standard output. Alternatively, a list of FIGfam IDs can be specified as command-line parameters.

Command-Line Options

url

The URL for the Sapling server, if it is to be different from the default.

c

Column index. If specified, indicates that the input IDs should be taken from the indicated column instead of the last column. The first column is column 1.