Documentation read from 04/17/2019 22:07:26 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_fc_figfams.



    svr_fc_figfams [-MinSc=n] < table_with_ff_column.tbl  > extended_with_scores_and_ffs.tbl

Output the functionally coupled FIGfams By specifying a MinSc, you restrict the output to functionally-coupled FIGfams that co-occur in at least n OTUs.

This script takes as input a tab-delimited file with FIGfam IDs at the end of each line. For each FIGfam ID, the coupling score and FIGfam ID of a functionally coupled FIGfam will be appended to the list.

This is a pipe command: the input is taken from the standard input and the output is to the standard output. Alternatively, a list of FIGfam IDs can be specified as command-line parameters.

Command-Line Options


The URL for the Sapling server, if it is to be different from the default.


Column index. If specified, indicates that the input IDs should be taken from the indicated column instead of the last column. The first column is column 1.