Documentation read from 04/17/2019 22:07:26 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_fasta_to_md5.



Convert Protein FASTA to MD5 Protein IDs

    svr_fasta_to_md5 <protein_list.fasta >protein_ids.tbl

This script takes a FASTA file of protein sequences from the standard input and writes a tab-delimited file of protein IDs to the standard output. Each output record will correspond to a single FASTA input record and will contain the incoming ID in the first column and the MD5 protein ID in the second column.

Command-Line Options


Display this command's parameters and options.

Output Format

The standard output is a tab-delimited file. Each output record consists of the ID of an incoming sequence following by the MD5 protein ID for the sequence itself.