Documentation read from 04/17/2019 22:07:25 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_coupled_reactions.



Takes as input a table containing reaction IDs and adds a column giving the "adjacent" reactions.

------ Example:

    svr_all_reactions | svr_coupled_reactions > table.with.coupled.reactions

would produce a 2-column table, each a pair of reaction IDs. There would be redundancy, since each pair of coupled reactions would show up twice.


Command-Line Options

-c Column

This is used only if the column containing reaction IDs is not the last.

Output Format

The standard output is a tab-delimited file. It consists of the input file with an extra column added (a reaction that is part of the set that are considered adjacent). Note that this implies that there will often be multiple output lines for a single input line.


Hey! The above document had some coding errors, which are explained below:

Around line 53:

=back without =over