Documentation read from 04/17/2019 22:07:25 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_contigs_in_genome.



    svr_contigs_in_genome <genome_ids.tbl >genome_data.tbl

For each incoming genome ID, return the IDs of its contigs.

This script takes as input a tab-delimited file with genome IDs at the end of each line. For each genome ID, multiple output lines are produced containing the ID of each contig in the genome.

This is a pipe command: the input is taken from the standard input and the output is to the standard output. It can alternatively take as input a list of genome IDs specified as command-line parameters.

Command-Line Options


The URL for the Sapling server, if it is to be different from the default.


Column index. If specified, indicates that the input IDs should be taken from the indicated column instead of the last column. The first column is column 1.