svr_closest_genes

    svr_closest_genes [--protein] genome sequence

Locate genes in a specified genome containing the specified protein or DNA sequence.

The output will be a tab-delimited file. For each gene containing the specified protein or DNA sequence, a line will be output containing the location of the gene found, the location of the match, and the FIG ID of the gene.

The specified sequence cannot contain ambiguity characters. In DNA sequences, U will be translated automatically to T.

Command-Line Options

url

The URL for the Sapling server, if it is to be different from the default.

protein

If specified, the sequence will be assumed to be a protein sequence; otherwise, it will be assumed to be a DNA sequence unless it contains characters other than A, C, G, T, or U.