Documentation read from 04/17/2019 22:07:25 version of /vol/public-pseed/FIGdisk/FIG/bin/svr_close_genomes.



List the IDs of the genomes that are functionally close to the input genomes.

    svr_close_genomes < genomes.tbl > close_genomes.tbl

This script takes as input a tab-delimited file with genome IDs at the end of each line. For each genome ID, multiple output lines are produced containing the ID and score of each functionally close genome found.

This is a pipe command: the input is taken from the standard input and the output is to the standard output.

Command-Line Options


The URL for the Sapling server, if it is to be different from the default.


The count of how many close genomes you would like to see [defaults to 10]


Column index. If specified, indicates that the input IDs should be taken from the indicated column instead of the last column. The first column is column 1.