svr_all_experiments

    svr_all_experiments -g genome >experiments.tbl

List all the experiments present for a specified genome or for all genomes lists in a file.

This script takes as input one or more genomes and for each genome lists all the experiments associated with it. The input should be a tab-delimited file with genome IDs in the last column. The output file will have an additional column containing the experiment IDs.

This is a pipe command. The input is from the standard input and the output is to the standard output. The number of output lines will in general be far greater than the number of input genomes.

Command-Line Options

url

The URL for the Sapling server, if it is to be different from the default.

c

Index (1-based) of the input column containing the genome ID. If omitted, the last column of the input will be used.

g

ID of a genome. If this option is specified, then the output file will contain two columns, with the incoming genome ID in the first column of every line and the second column containing the experiment IDs. The standard input will not be read.