svr_add_lengths_to_blast

Add query and contig lengths to m8 blast output

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Example:

    svr_add_lengths_to_blast -i queryF -d db < blast.m8 > with.2.extra.columns

Command-Line Options

-i queryF

This gives the name of the file containing the query sequences in FAST format

-d db

This gives the name of the file containing the db contigs in FAST format

Output Format

The output is the m8 blast output with two columns added. The first is the length of the query sequence, and the second is the length of the db contig.