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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|93061.5.peg.1667: Staphylococcus aureus subsp. aureus NCTC 8325

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NCBI Taxonomy Id: 93061

Current Assignment: Free methionine-(R)-sulfoxide reductase, contains GAF domain
Translate Function Assignments


Context on contig NC_007795 from base 1728490 to 1739529 (11040 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1662 1729260 1728490 771 -           Putative membrane protein YfcA locus|SAOUHSC_01823, protein_id|YP_500328.1, gi|88195523, geneID|3921773
1663 1730527 1729304 1224 - 43 7 2: 29 24   tRNA S(4)U 4-thiouridine synthase (former ThiI) locus|SAOUHSC_01824, protein_id|YP_500329.1, gi|88195524, geneID|3921774
1664 1731693 1730527 1167 - -1 7 6: 18 15 16 1 28 5   Cysteine desulfurase (EC 2.8.1.7) locus|SAOUHSC_01825, protein_id|YP_500330.1, gi|88195525, geneID|3921775
1665 1731830 1731964 135 + 136         FIG01108306: hypothetical protein locus|SAOUHSC_01826, protein_id|YP_500331.1, gi|88195526, geneID|3921776
1666 1733732 1732038 1695 - 73 11 2: 13 1   Septation ring formation regulator EzrA locus|SAOUHSC_01827, protein_id|YP_500332.1, gi|88195527, geneID|3921777
1667 1733869 1734333 465 + 136   1: 1   Free methionine-(R)-sulfoxide reductase, contains GAF domain locus|SAOUHSC_01828, protein_id|YP_500333.1, gi|88195528, geneID|3921778
1668 1734577 1735179 603 + 243     3: 23 7 1   SSU ribosomal protein S4p (S9e) @ SSU ribosomal protein S4p (S9e), zinc-independent gene_name|rpsD, locus|SAOUHSC_01829, protein_id|YP_500334.1, gi|88195529, geneID|3921779
1669 1736138 1735395 744 - 215         Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) locus|SAOUHSC_01830, protein_id|YP_500336.1, gi|88195530, geneID|3921780
1670 1736218 1736664 447 + 79     2: 21 12   Organic hydroperoxide resistance protein locus|SAOUHSC_01831, protein_id|YP_500337.1, gi|88195531, geneID|3921781
1671 1736778 1737938 1161 + 113     2: 3 2   Phosphoserine aminotransferase, putative (EC 2.6.1.52) locus|SAOUHSC_01832, protein_id|YP_500338.1, gi|88195532, geneID|3921782
1672 1737925 1739529 1605 + -14     16: 19 11 3 2 25 4 22 17 9 26 6 20 27 10 14 8   D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) locus|SAOUHSC_01833, protein_id|YP_500339.1, gi|88195533, geneID|3921783

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
CBSS-393130.3.peg.794 OlgaV CDS_ID OB2202


  Protein Sequence

>fig|93061.5.peg.1667 Free methionine-(R)-sulfoxide reductase, contains GAF domain
MTTINPTNYTLLKKQAASLIEDEHHMIAILSNMSALLNDNLDQINWVGFYLLEQNELILG
PFQGHPACVHIPIGKGVCGTAVSERRTQIVADVHQFEGHIACDANSKSEIVVPIFKDDKI
IGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQLA

MD5 = 1c4ad236b164ff95ce81df32c1c8f607


  DNA Sequence

>fig|93061.5.peg.1667 Free methionine-(R)-sulfoxide reductase, contains GAF domain
atgacaacaattaacccaacaaactacacattattaaagaaacaagcagcaagccttatt
gaagatgaacatcacatgattgctattttaagtaacatgtctgccttattaaatgataat
ctagatcaaattaattgggttggcttttacttattggaacaaaatgaacttatacttgga
cctttccaaggacaccccgcttgtgtccacattccaatcggaaaaggtgtatgtggtaca
gccgtttcagaacgtcgtacacaaattgtagctgatgttcatcaattcgaaggacatatc
gcttgtgatgctaatagtaagtctgagattgtcgttccaattttcaaagatgataaaatt
atcggcgtcttagatatcgatgcccctataacggatcgatttgatgacaatgacaaagaa
catcttgaagcaattgttaaaattattgaaaagcaactcgcataa


  DNA with Flanking Sequence

>fig|93061.5.peg.1667 Free methionine-(R)-sulfoxide reductase, contains GAF domain
gatagctttgttcgtaactatccatcaactcatttgcatcatcaatttcactttgagatg
cgttgaaactaaatttatctaataaagcctcagcattatggattttttcttccacaggag
ctagatacttatttgtactttctacggtgtcctttttcattgcatcgtatttcgtttttg
tttcaccttttaaattcaacttaaataattgtgcaaggttttgatcaaaaggtaacgtct
caatttcatttttacgttcgattgctttttcaataatttgtcgtttatttgaacgtaaat
agaataatacacctacagcaatcaatataatcacaattattgccaaaatgatatataaca
ccatatgcttctcctcctaatttatcattactattataacgtaattttgcttaaggataa
attataaaatgaatttattgccataatattttcgaaattctatactattataaaatctat
gaaaataagaggttttaaatatgacaacaattaacccaacaaactacacattattaaaga
aacaagcagcaagccttattgaagatgaacatcacatgattgctattttaagtaacatgt
ctgccttattaaatgataatctagatcaaattaattgggttggcttttacttattggaac
aaaatgaacttatacttggacctttccaaggacaccccgcttgtgtccacattccaatcg
gaaaaggtgtatgtggtacagccgtttcagaacgtcgtacacaaattgtagctgatgttc
atcaattcgaaggacatatcgcttgtgatgctaatagtaagtctgagattgtcgttccaa
ttttcaaagatgataaaattatcggcgtcttagatatcgatgcccctataacggatcgat
ttgatgacaatgacaaagaacatcttgaagcaattgttaaaattattgaaaagcaactcg
cataaaaggacatcagcattttcaataaagtgttgacagttagcaggaaaatgttacaat
aatctttgtgtgaattaacgaaagtagcagttgtatattattgagcgctatgttgttccc
aatgcggacgtgtcacgtaactgtcgctataaggtgaagacacataaaacaatatatctt
agtaagcatgcaacactcttttttgtttattcataacaacaaaaaagaattaaaggagga
gtcttattatggctcgattcagaggttcaaactggaaaaaatctcgtcgtttaggtatct
ctttaagcggtactggtaaagaattagaaaaacgtccttacgcaccaggacaacatggtc
caaaccaacgtaaaaaattatcagaatatggtttacaattacgtgaaaaacaaaaattac
gttacttatatggaatgactgaaagacaattccgtaacacatttgacatcgctggtaaaa
aattcggtgtacacggtgaaaactt


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT05SA1629 Staphylococcus aureus NCTC 8325     GAF domain protein
cmr|SACOL1768 Staphylococcus aureus subsp. aureus COL     GAF domain protein
cmr|SAUSA300_1665 Staphylococcus aureus subsp. aureus USA300-FPR3757     conserved hypothetical protein
dbj|BAF67884.1 Staphylococcus aureus subsp. aureus str. Newman     conserved hypothetical protein
fig|367830.3.peg.1006 Staphylococcus aureus subsp. aureus USA300 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|426430.6.peg.1563 Staphylococcus aureus subsp. aureus str. Newman FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|426430.8.peg.1745 Staphylococcus aureus subsp. aureus str. Newman FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|450394.6.peg.970 Staphylococcus aureus subsp. aureus USA300_TCH959 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|451515.3.peg.1816 Staphylococcus aureus subsp. aureus USA300_FPR3757 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|451516.9.peg.1805 Staphylococcus aureus subsp. aureus USA300_TCH1516 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|452948.4.peg.834 Staphylococcus aureus 930918-3 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|455227.3.peg.1055 Staphylococcus aureus D30 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|546342.3.peg.937 Staphylococcus aureus subsp. aureus str. JKD6008 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|546343.3.peg.2415 Staphylococcus aureus subsp. aureus str. JKD6009 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|548474.3.peg.2176 Staphylococcus aureus subsp. aureus TCH130 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|553567.3.peg.377 Staphylococcus aureus A5948 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|553590.4.peg.1940 Staphylococcus aureus A9754 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|553594.3.peg.1815 Staphylococcus aureus A9765 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|644279.4.peg.1864 Staphylococcus aureus subsp. aureus 132 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|93061.3.peg.1662 Staphylococcus aureus subsp. aureus NCTC 8325 FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
fig|93062.4.peg.435 Staphylococcus aureus subsp. aureus COL FIG   Free methionine-(R)-sulfoxide reductase, contains GAF domain
gb|AAW38297.1 Staphylococcus aureus subsp. aureus COL     GAF domain protein
gb|ABD22094.1 Staphylococcus aureus subsp. aureus USA300_FPR3757     conserved hypothetical protein
gb|ABD30896.1 Staphylococcus aureus subsp. aureus NCTC 8325     GAF domain protein
gb|ABX29713.1 Staphylococcus aureus subsp. aureus USA300_TCH1516     possible GAF domain protein
gb|EES92619.1 Staphylococcus aureus subsp. aureus USA300_TCH959     GAF domain protein
gb|EES96280.1 Staphylococcus aureus subsp. aureus TCH130     GAF domain protein
gb|EEV84231.1 Staphylococcus aureus A5948     GAF domain-containing protein
gb|EEW45304.1 Staphylococcus aureus 930918-3     hypothetical protein SA930_0445
gb|EEW47413.1 Staphylococcus aureus D30     hypothetical protein SAD30_2237
gi|150374624 Staphylococcus aureus subsp. aureus str. Newman NCBI   conserved hypothetical protein
gi|151221824 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_1612
gi|160368742 Staphylococcus aureus subsp. aureus USA300_TCH1516 NCBI   possible GAF domain protein
gi|161509933 Staphylococcus aureus subsp. aureus USA300_TCH1516 NCBI   GAF domain-containing protein
gi|221137949 Staphylococcus aureus subsp. aureus str. JKD6008 NCBI   GAF domain-containing protein
gi|221142353 Staphylococcus aureus subsp. aureus str. JKD6009 NCBI   GAF domain-containing protein
gi|253723890 Staphylococcus aureus subsp. aureus USA300_TCH959 NCBI   GAF domain protein
gi|253727551 Staphylococcus aureus subsp. aureus TCH130 NCBI   GAF domain protein
gi|253732368 Staphylococcus aureus subsp. aureus USA300_TCH959 NCBI   GAF domain protein
gi|253734497 Staphylococcus aureus subsp. aureus TCH130 NCBI   GAF domain protein
gi|257861423 Staphylococcus aureus A5948 NCBI   GAF domain-containing protein
gi|258450887 Staphylococcus aureus A5948 NCBI   GAF domain-containing protein
gi|259160277 Staphylococcus aureus 930918-3 NCBI   hypothetical protein SA930_0445
gi|259162849 Staphylococcus aureus D30 NCBI   hypothetical protein SAD30_2237
gi|57286203 Staphylococcus aureus subsp. aureus COL NCBI   GAF domain protein
gi|57652017 Staphylococcus aureus subsp. aureus COL NCBI   GAF domain-containing protein
gi|87127580 Staphylococcus aureus subsp. aureus USA300_FPR3757 NCBI   conserved hypothetical protein
gi|87161606 Staphylococcus aureus subsp. aureus USA300_FPR3757 NCBI   hypothetical protein SAUSA300_1665
gi|87203086 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   GAF domain protein
gi|88195528 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   GAF domain-containing protein
img|637152502 Staphylococcus aureus aureus COL IMG   GAF domain protein
img|637888314 Staphylococcus aureus aureus USA300 IMG   hypothetical protein
img|637894427 Staphylococcus aureus aureus NCTC 8325 IMG   GAF domain protein
img|640795993 Staphylococcus aureus aureus Newman IMG   hypothetical protein
img|641309666 Staphylococcus aureus subsp. aureus USA300_TCH1516 IMG   possible GAF domain protein
img|641771635 Staphylococcus aureus aureus USA300_TCH959 IMG   possible GAF domain protein
kegg|saa:SAUSA300_1665 Staphylococcus aureus subsp. aureus USA300_FPR3757 KEGG   hypothetical protein
kegg|sac:SACOL1768 Staphylococcus aureus subsp. aureus COL KEGG   GAF domain-containing protein
kegg|sae:NWMN_1612 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
kegg|sao:SAOUHSC_01828 Staphylococcus aureus subsp. aureus NCTC 8325 KEGG   GAF domain-containing protein
kegg|sax:USA300HOU_1706 Staphylococcus aureus subsp. aureus USA300_TCH1516 KEGG   GAF domain-containing protein
ref|YP_001332646.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_1612
ref|YP_001575592.1 Staphylococcus aureus subsp. aureus USA300_TCH1516 RefSeq   GAF domain-containing protein
ref|YP_186602.1 Staphylococcus aureus subsp. aureus COL RefSeq   GAF domain-containing protein
ref|YP_494359.1 Staphylococcus aureus subsp. aureus USA300_FPR3757 RefSeq   hypothetical protein SAUSA300_1665
ref|YP_500333.1 Staphylococcus aureus subsp. aureus NCTC 8325 RefSeq   GAF domain-containing protein
ref|ZP_03562751.1 Staphylococcus aureus subsp. aureus str. JKD6008 RefSeq   GAF domain-containing protein
ref|ZP_03566846.1 Staphylococcus aureus subsp. aureus str. JKD6009 RefSeq   GAF domain-containing protein
ref|ZP_04866533.1 Staphylococcus aureus subsp. aureus USA300_TCH959 RefSeq   GAF domain protein
ref|ZP_04868662.1 Staphylococcus aureus subsp. aureus TCH130 RefSeq   GAF domain protein
ref|ZP_05698940.1 Staphylococcus aureus A5948 RefSeq   GAF domain-containing protein
tr|A6QHQ2 Staphylococcus aureus (strain Newman) TrEMBL   Putative uncharacterized protein
tr|A8Z2N5 Staphylococcus aureus (strain USA300 / TCH1516) TrEMBL   Possible GAF domain protein
tr|C5N6E1 Staphylococcus aureus subsp. aureus USA300_TCH959 TrEMBL   GAF domain protein
tr|C5Q3E3 Staphylococcus aureus subsp. aureus TCH130 TrEMBL   GAF domain protein
tr|Q2FG19 Staphylococcus aureus (strain USA300) TrEMBL   Putative uncharacterized protein
tr|Q2FXK7 Staphylococcus aureus (strain NCTC 8325) TrEMBL   GAF domain protein
tr|Q5HF55 Staphylococcus aureus (strain COL) TrEMBL   GAF domain protein


  Links to Related Entries in Other Sites

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  Functional Coupling

Score Peg Function
7 fig|93061.5.peg.1663 tRNA S(4)U 4-thiouridine synthase (former ThiI)
7 fig|93061.5.peg.1664 Cysteine desulfurase (EC 2.8.1.7)
11 fig|93061.5.peg.1666 Septation ring formation regulator EzrA


  Attributes

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Key
Link Explains Key		 Value


  Protein Families

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