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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|426430.8.peg.1140: Staphylococcus aureus subsp. aureus str. Newman

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NCBI Taxonomy Id: 426430

Current Assignment: Heme transporter IsdDEF, membrane component IsdD
Translate Function Assignments


Context on contig NC_009641 from base 1139902 to 1152794 (12893 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1136 1139902 1141347 1446 +           Phage endolysin CHAP endopeptidase / Phage endolysin N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) locus|NWMN_1039, protein_id|YP_001332073.1, gi|151221251, geneID|5330643
1137 1144017 1142080 1938 - 732     1: 1   Cell surface receptor IsdB for hemoglobin and hemoglobin-haptoglobin complexes gene_name|isdB, locus|NWMN_1040, protein_id|YP_001332074.1, gi|151221252, geneID|5330644
1138 1145272 1144220 1053 - 202     2: 2 1 dlit(17229211)
dlit(11953376)
dlit(11952908)
dlit(14982642)
dlit(17042505)
dlit(12574635)		 Cell surface protein IsdA, transfers heme from hemoglobin to apo-IsdC gene_name|isdA, locus|NWMN_1041, protein_id|YP_001332075.1, gi|151221253, geneID|5332052
1139 1145481 1146164 684 + 208     1: 1 dlit(11952908)
dlit(12574635)
dlit(11830639)
dlit(15718231)
dlit(15240116)
dlit(17287214)		 NPQTN cell wall anchored protein IsdC gene_name|isdC, locus|NWMN_1042, protein_id|YP_001332076.1, gi|151221254, geneID|5332051
1140 1146164 1147240 1077 + -1     1: 1   Heme transporter IsdDEF, membrane component IsdD gene_name|isdD, locus|NWMN_1043, protein_id|YP_001332077.1, gi|151221255, geneID|5332053
1141 1147369 1148115 747 + 128     1: 1   Heme transporter IsdDEF, lipoprotein IsdE gene_name|isdE, locus|NWMN_1044, protein_id|YP_001332078.1, gi|151221256, geneID|5332054
1142 1148125 1149093 969 + 9     1: 1   Heme transporter IsdDEF, permease component IsdF gene_name|isdF, locus|NWMN_1045, protein_id|YP_001332079.1, gi|151221257, geneID|5332055
1143 1149155 1149889 735 + 61     2: 2 1   NPQTN specific sortase B gene_name|srtB, locus|NWMN_1046, protein_id|YP_001332080.1, gi|151221258, geneID|5332056
1144 1149908 1150231 324 + 18     1: 1 dlit(14570922)
dlit(15520015)		 Heme-degrading monooxygenase, staphylobilin-producing (EC 1.14.99.48) # IsdG gene_name|isdG, locus|NWMN_1047, protein_id|YP_001332081.1, gi|151221259, geneID|5332506
1145 1150268 1150375 108 + 36         Doubtful CDS. No database matches  
1146 1150615 1151355 741 + 239         RNA 2'-O-methyltransferase YsgA, TrmH family locus|NWMN_1048, protein_id|YP_001332082.1, gi|151221260, geneID|5332057
1147 1151736 1152794 1059 + 380     2: 3 4   Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) gene_name|pheS, locus|NWMN_1049, protein_id|YP_001332083.1, gi|151221261, geneID|5330645

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Heme,_hemin_uptake_and_utilization_systems_in_GramPositives SvetaG Heme transporter IsdDEF, membrane component IsdD


  Protein Sequence

>fig|426430.8.peg.1140 Heme transporter IsdDEF, membrane component IsdD
MRNVKQIATKSIIAIISLGILTYTTMIGSVLADEIKYPSAKFNQPEAKDKTELTTSIFDE
KIKENKALELLIFNQENKNVTEEQQLVDEKAQLISDMTGKIYLQVKLKGQIDKEQLVFQN
DKNEEFPFVIKDEKDDTIVRILIEQHMDKINMHVKTLAEKKNLDNKEMVYSIHFKEKKVQ
HDDAKEVPSKHQNQENNQDQLKKDIDDKKDSQKSDTKERRTSLFTEKGLNDIPVQKDKVQ
QDSNKKIENERPKASGTLKVENSPPTIKKVENNHKEQPKHKDEKSKKEKKKVVEKEKALP
AFNRDDDSKNSSQLSSDIKELDEPNHKKQYMLFAAGIVLATILLISAHLYSRKRGNQV

MD5 = e8b86bb122c2f9581262b207af63da5f


  DNA Sequence

>fig|426430.8.peg.1140 Heme transporter IsdDEF, membrane component IsdD
atgagaaatgttaaacaaattgctacaaaatctattatagctattattagcttaggtata
cttacatatacaacaatgattggtagcgtgttggctgatgagataaaatatccatcagcc
aaatttaatcaacctgaagcaaaagataaaacagaattaactacatcaatttttgatgaa
aagataaaagagaataaagcgttagagttactaatttttaatcaagaaaataaaaatgta
actgaggaacaacaactagttgacgaaaaggcgcaattgatttcagatatgactggtaaa
atttacttgcaagtaaagctaaaaggtcaaatagataaagaacaacttgtttttcaaaat
gacaaaaatgaagaatttccttttgttataaaagatgaaaaggatgacacaatagtaaga
attttaattgaacagcatatggataaaatcaatatgcatgttaaaacgttggctgaaaag
aaaaatctagataacaaagaaatggtgtattctattcattttaaagagaaaaaagtacaa
catgatgatgcaaaagaagtgccttcaaaacatcaaaatcaagaaaataatcaagatcag
cttaaaaaagatattgatgacaaaaaagatagtcaaaaatcagatactaaggaaagacgt
actagcctttttactgaaaaaggattaaatgatattcctgtacaaaaagataaagtgcaa
caagacagtaataaaaagattgaaaatgagcgacctaaagcatcaggtacattaaaagtt
gaaaatagccctccaacaataaaaaaggttgaaaataatcacaaagagcaaccgaaacat
aaagatgaaaaatcaaaaaaggaaaagaaaaaagtagttgaaaaagaaaaagcgttacca
gcttttaatagagatgatgatagcaagaatagtagtcaattatctagtgatattaaagaa
cttgatgaaccaaatcataaaaagcaatatatgttatttgcagctggcattgtgttagca
actattttacttatttcggcacatttatacagcagaaagagaggtaaccaagtttga


  DNA with Flanking Sequence

>fig|426430.8.peg.1140 Heme transporter IsdDEF, membrane component IsdD
aaaaatggtaaattgtatgttcaaataactgtcaaccacagtcattggattactggaatg
agtatcgaaggacataaagaaaatattattagtaaaaacactgccaaagatgaacgcact
tctgaatttgaagtaagtaagttgaacggtaaaatagatggaaaaattgacgtttatatc
gatgaaaaagtaaatggaaagccattcaaatatgaccatcattacaacattacatataaa
tttaatggaccaactgatgtagcaggtgctaatgcaccaggtaaagatgataaaaattct
gcttcaggtagtgacaaaggatctgatggaacgactactggtcaaagtgaatctaatagt
tcgaataaagacaaagtagaaaatccacaaacaaatgctggtacacctgcatatatatat
gcaataccagttgcatccttagcattattaatcgcaatcacattgtttgttagaaaaaaa
tctaaaggcaatgtggaataatgagaaatgttaaacaaattgctacaaaatctattatag
ctattattagcttaggtatacttacatatacaacaatgattggtagcgtgttggctgatg
agataaaatatccatcagccaaatttaatcaacctgaagcaaaagataaaacagaattaa
ctacatcaatttttgatgaaaagataaaagagaataaagcgttagagttactaattttta
atcaagaaaataaaaatgtaactgaggaacaacaactagttgacgaaaaggcgcaattga
tttcagatatgactggtaaaatttacttgcaagtaaagctaaaaggtcaaatagataaag
aacaacttgtttttcaaaatgacaaaaatgaagaatttccttttgttataaaagatgaaa
aggatgacacaatagtaagaattttaattgaacagcatatggataaaatcaatatgcatg
ttaaaacgttggctgaaaagaaaaatctagataacaaagaaatggtgtattctattcatt
ttaaagagaaaaaagtacaacatgatgatgcaaaagaagtgccttcaaaacatcaaaatc
aagaaaataatcaagatcagcttaaaaaagatattgatgacaaaaaagatagtcaaaaat
cagatactaaggaaagacgtactagcctttttactgaaaaaggattaaatgatattcctg
tacaaaaagataaagtgcaacaagacagtaataaaaagattgaaaatgagcgacctaaag
catcaggtacattaaaagttgaaaatagccctccaacaataaaaaaggttgaaaataatc
acaaagagcaaccgaaacataaagatgaaaaatcaaaaaaggaaaagaaaaaagtagttg
aaaaagaaaaagcgttaccagcttttaatagagatgatgatagcaagaatagtagtcaat
tatctagtgatattaaagaacttgatgaaccaaatcataaaaagcaatatatgttatttg
cagctggcattgtgttagcaactattttacttatttcggcacatttatacagcagaaaga
gaggtaaccaagtttgagaatcataaagtatttaaccattttagtgataagcgtcgttat
cttaaccagctgtcaatcttccagttctcaagaatcaactaaatccggcgaattcagaat
cgtaccaacaactgttgcattgacaatgacattggacaaattggatttaccaattgtcgg
caaacccacgtcatataagacattgcctaatcgttataaagatgtaccggaaattggtca
accaatggagccgaatgttgaagctgttaaaaagttaaaaccaacacatgttttgagtgt
gtcaacgattaaagatgaaatgcaaccattttacaaacaattaaatatgaaaggctactt
ttatgattttgatagtttaaaagggatgcaaaagtcgattacacaattaggtgatcaatt
taatcgtaaagcacaagcaaaagaattaaatgaccatttaaattctgtaaagcaaaaaat
tgaaaataaagcagctaaacaaaagaaacatcccaaa


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT05SA0977 Staphylococcus aureus NCTC 8325     iron-regulated protein
cmr|SACOL1142 Staphylococcus aureus subsp. aureus COL     hypothetical protein
cmr|SAUSA300_1031 Staphylococcus aureus subsp. aureus USA300-FPR3757     conserved hypothetical protein
dbj|BAF67315.1 Staphylococcus aureus subsp. aureus str. Newman     iron-transporting membrane protein
fig|367830.3.peg.2275 Staphylococcus aureus subsp. aureus USA300 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|426430.6.peg.1015 Staphylococcus aureus subsp. aureus str. Newman FIG   Heme transporter IsdDEF, membrane component IsdD
fig|451515.3.peg.1129 Staphylococcus aureus subsp. aureus USA300_FPR3757 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|451516.9.peg.1133 Staphylococcus aureus subsp. aureus USA300_TCH1516 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|452948.4.peg.722 Staphylococcus aureus 930918-3 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|546342.3.peg.1705 Staphylococcus aureus subsp. aureus str. JKD6008 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|553567.3.peg.1320 Staphylococcus aureus A5948 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|553590.4.peg.177 Staphylococcus aureus A9754 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|553594.3.peg.40 Staphylococcus aureus A9765 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|644279.4.peg.1139 Staphylococcus aureus subsp. aureus 132 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|93061.3.peg.1038 Staphylococcus aureus subsp. aureus NCTC 8325 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|93061.5.peg.993 Staphylococcus aureus subsp. aureus NCTC 8325 FIG   Heme transporter IsdDEF, membrane component IsdD
fig|93062.19.peg.1113 Staphylococcus aureus subsp. aureus COL FIG   Heme transporter IsdDEF, membrane component IsdD
fig|93062.4.peg.1411 Staphylococcus aureus subsp. aureus COL FIG   Heme transporter IsdDEF, membrane component IsdD
gb|AAW38021.1 Staphylococcus aureus subsp. aureus COL     hypothetical protein SACOL1142
gb|ABD22638.1 Staphylococcus aureus subsp. aureus USA300_FPR3757     conserved hypothetical protein
gb|ABD30199.1 Staphylococcus aureus subsp. aureus NCTC 8325     conserved hypothetical protein
gb|ABX29085.1 Staphylococcus aureus subsp. aureus USA300_TCH1516     hypothetical protein USA300HOU_1066
gb|EEV83264.1 Staphylococcus aureus A5948     conserved hypothetical protein
gi|150374055 Staphylococcus aureus subsp. aureus str. Newman NCBI   iron-transporting membrane protein
gi|151221255 Staphylococcus aureus subsp. aureus str. Newman NCBI   hypothetical protein NWMN_1043
gi|160368114 Staphylococcus aureus subsp. aureus USA300_TCH1516 NCBI   hypothetical protein USA300HOU_1066
gi|161509305 Staphylococcus aureus subsp. aureus USA300_TCH1516 NCBI   hypothetical protein USA300HOU_1066
gi|221138675 Staphylococcus aureus subsp. aureus str. JKD6008 NCBI   hypothetical protein SauraJK_08535
gi|257860437 Staphylococcus aureus A5948 NCBI   conserved hypothetical protein
gi|258451829 Staphylococcus aureus A5948 NCBI   conserved hypothetical protein
gi|57285927 Staphylococcus aureus subsp. aureus COL NCBI   hypothetical protein SACOL1142
gi|57651741 Staphylococcus aureus subsp. aureus COL NCBI   hypothetical protein SACOL1142
gi|87128124 Staphylococcus aureus subsp. aureus USA300_FPR3757 NCBI   conserved hypothetical protein
gi|87162150 Staphylococcus aureus subsp. aureus USA300_FPR3757 NCBI   hypothetical protein SAUSA300_1031
gi|87202389 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   conserved hypothetical protein
gi|88194831 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   hypothetical protein SAOUHSC_01084
img|637151904 Staphylococcus aureus aureus COL IMG   hypothetical protein
img|637887683 Staphylococcus aureus aureus USA300 IMG   hypothetical protein
img|637893722 Staphylococcus aureus aureus NCTC 8325 IMG   hypothetical protein
img|640795423 Staphylococcus aureus aureus Newman IMG   iron-transporting membrane protein
img|641309035 Staphylococcus aureus subsp. aureus USA300_TCH1516 IMG   hypothetical protein
kegg|saa:SAUSA300_1031 Staphylococcus aureus subsp. aureus USA300_FPR3757 KEGG   hypothetical protein
kegg|sac:SACOL1142 Staphylococcus aureus subsp. aureus COL KEGG   hypothetical protein
kegg|sae:NWMN_1043 Staphylococcus aureus subsp. aureus Newman KEGG   hypothetical protein
kegg|sao:SAOUHSC_01084 Staphylococcus aureus subsp. aureus NCTC 8325 KEGG   hypothetical protein
kegg|sax:USA300HOU_1066 Staphylococcus aureus subsp. aureus USA300_TCH1516 KEGG   hypothetical protein
ref|YP_001332077.1 Staphylococcus aureus subsp. aureus str. Newman RefSeq   hypothetical protein NWMN_1043
ref|YP_001574964.1 Staphylococcus aureus subsp. aureus USA300_TCH1516 RefSeq   hypothetical protein USA300HOU_1066
ref|YP_186005.1 Staphylococcus aureus subsp. aureus COL RefSeq   hypothetical protein SACOL1142
ref|YP_493729.1 Staphylococcus aureus subsp. aureus USA300_FPR3757 RefSeq   hypothetical protein SAUSA300_1031
ref|YP_499629.1 Staphylococcus aureus subsp. aureus NCTC 8325 RefSeq   hypothetical protein SAOUHSC_01084
ref|ZP_03563477.1 Staphylococcus aureus subsp. aureus str. JKD6008 RefSeq   hypothetical protein SauraJK_08535
ref|ZP_05699850.1 Staphylococcus aureus A5948 RefSeq   conserved hypothetical protein
tr|A6QG33 Staphylococcus aureus (strain Newman) TrEMBL   Iron-transporting membrane protein
tr|A8Z1R2 Staphylococcus aureus (strain USA300 / TCH1516) TrEMBL   Putative uncharacterized protein
tr|Q2FHU9 Staphylococcus aureus (strain USA300) TrEMBL   Putative uncharacterized protein
tr|Q2FZE7 Staphylococcus aureus (strain NCTC 8325) TrEMBL   Putative uncharacterized protein
tr|Q5HGV2 Staphylococcus aureus (strain COL) TrEMBL   Putative uncharacterized protein isdD


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  Attributes

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  Protein Families

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