The SEED: an Annotation/Analysis Tool Provided by FIG
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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED

Subsystem: CBSS-84588.1.peg.1247

Author: OlgaV


Functional Roles
Column Abbrev Functional Role GO Pre-Computed Publication(s) Relevant Publication(s)
1 R1 All3116 protein Add Publication(s)
2 R6 Aminotransferase ScrA Add Publication(s)
3 R4 Cysteine desulfurase (EC 2.8.1.7) 5 Publication(s)
4 R4? Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA Add Publication(s)
5 R2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 1 Publication(s)
6 R3 Diaminopimelate epimerase (EC 5.1.1.7) Add Publication(s)
7 R5 Tlr0729 protein Add Publication(s)


Show Phylogenetic Tree
Basic Spreadsheet
Genome ID Organism Variant Code R1 R6 R4 R4? R2 R3 R5
644279.4 Staphylococcus aureus subsp. aureus 132 [B] 1     1774, 1861   727    
585143.3 Staphylococcus aureus subsp. aureus 55/2053 [B] 1     2158, 2247   1162    
585144.3 Staphylococcus aureus subsp. aureus 58-424 [B] 1     2183, 2278   1518    
585145.3 Staphylococcus aureus subsp. aureus 65-1322 [B] 1     1885, 1978   1151    
585146.3 Staphylococcus aureus subsp. aureus 68-397 [B] 1     2156, 2244   1156    
585147.3 Staphylococcus aureus subsp. aureus A017934/97 [B] 1     1231, 1318   205    
762962.3 Staphylococcus aureus subsp. aureus ATCC 51811 [B] 1     273, 362   1339    
585148.3 Staphylococcus aureus subsp. aureus Btn1260 [B] 1     1207, 1294   173    
585149.6 Staphylococcus aureus subsp. aureus C101 [B] 1     1796, 1883   778    
585150.3 Staphylococcus aureus subsp. aureus C160 [B] 1     1882, 1970   1198    
Genome ID Organism Variant Code R1 R6 R4 R4? R2 R3 R5
585151.3 Staphylococcus aureus subsp. aureus C427 [B] 1     841, 928   266    
93062.19 Staphylococcus aureus subsp. aureus COL [B] 1     1634, 1723   681    
93062.4 Staphylococcus aureus subsp. aureus COL [B] 1     432, 1510   192    
585152.3 Staphylococcus aureus subsp. aureus D139 [B] 1     1617, 1707   572    
585153.3 Staphylococcus aureus subsp. aureus E1410 [B] 1     1900, 1988   1209    
681288.4 Staphylococcus aureus subsp. aureus ED98 [B] 1     1620, 1728   598    
585154.3 Staphylococcus aureus subsp. aureus EMRSA16 [B] 1     1322, 1739   609    
585155.3 Staphylococcus aureus subsp. aureus H19 [B] 1     1844, 1948   1199    
359787.11 Staphylococcus aureus subsp. aureus JH1 [B] 1     1756, 1850   710    
Genome ID Organism Variant Code R1 R6 R4 R4? R2 R3 R5
359787.3 Staphylococcus aureus subsp. aureus JH1 [B] 1     316, 1447   708    
359786.13 Staphylococcus aureus subsp. aureus JH9 [B] 1     1779, 1873   720    
359786.3 Staphylococcus aureus subsp. aureus JH9 [B] 1     271, 1726   2446    
585156.3 Staphylococcus aureus subsp. aureus M1015 [B] 1     1176, 1263   174    
585157.3 Staphylococcus aureus subsp. aureus M809 [B] 1     1353, 1441   337    
585158.3 Staphylococcus aureus subsp. aureus M876 [B] 1     2141, 2228   1147    
585159.3 Staphylococcus aureus subsp. aureus M899 [B] 1     1696, 1783   763    
548470.3 Staphylococcus aureus subsp. aureus MN8 [B] 1     2423, 2511   1448    
282458.4 Staphylococcus aureus subsp. aureus MRSA252 [B] 1     1704, 1798   659    
Genome ID Organism Variant Code R1 R6 R4 R4? R2 R3 R5
282458.1 Staphylococcus aureus subsp. aureus MRSA252 [B] 1     1609, 1698   617    
282459.5 Staphylococcus aureus subsp. aureus MSSA476 [B] 1     1619, 1706   634    
282459.1 Staphylococcus aureus subsp. aureus MSSA476 [B] 1     1543, 1629   602    
196620.5 Staphylococcus aureus subsp. aureus MW2 [B] 1     1639, 1727   637    
196620.1 Staphylococcus aureus subsp. aureus MW2 [B] 1     1572, 1659   604    
418127.6 Staphylococcus aureus subsp. aureus Mu3 [B] 1     1653, 1748   648    
418127.4 Staphylococcus aureus subsp. aureus Mu3 [B] 1     1496, 1583   600    
158878.14 Staphylococcus aureus subsp. aureus Mu50 [B] 1     1675, 1770   651    
585891.3 Staphylococcus aureus subsp. aureus Mu50-omega [B] 1     1672, 1767   650    
Genome ID Organism Variant Code R1 R6 R4 R4? R2 R3 R5
158878.1 Staphylococcus aureus subsp. aureus Mu50 [B] 1     1622, 1716   642    
158879.11 Staphylococcus aureus subsp. aureus N315 [B] 1     1564, 1658   629    
158879.1 Staphylococcus aureus subsp. aureus N315 [B] 1     1497, 1588   613    
93061.5 Staphylococcus aureus subsp. aureus NCTC 8325 [B] 1     1575, 1664   580    
93061.3 Staphylococcus aureus subsp. aureus NCTC 8325 [B] 1     1659, 1741   621    
548474.3 Staphylococcus aureus subsp. aureus TCH130 [B] 1     688, 2179   1583    
548473.3 Staphylococcus aureus subsp. aureus TCH60 [B] 1     1565, 1652   1281    
548475.3 Staphylococcus aureus subsp. aureus TCH70 [B] 1     611, 700   941    
367830.3 Staphylococcus aureus subsp. aureus USA300 [B] 1     393, 1004   1096    
Genome ID Organism Variant Code R1 R6 R4 R4? R2 R3 R5
451515.3 Staphylococcus aureus subsp. aureus USA300_FPR3757 [B] 1     1724, 1813   702    
451516.9 Staphylococcus aureus subsp. aureus USA300_TCH1516 [B] 1     1713, 1802   706    
450394.6 Staphylococcus aureus subsp. aureus USA300_TCH959 [B] 1     880, 968   1205    
585160.3 Staphylococcus aureus subsp. aureus WBG10049 [B] 1     1162, 1250   169    
585161.3 Staphylococcus aureus subsp. aureus WW2703/97 [B] 1     1344, 1432   513    
505321.3 Staphylococcus aureus subsp. aureus str. CF-Marseille [B] 1     437, 568, 2144   755    
546342.3 Staphylococcus aureus subsp. aureus str. JKD6008 [B] 1     934, 2067   2297    
546343.3 Staphylococcus aureus subsp. aureus str. JKD6009 [B] 1     1132, 2412   873    
426430.8 Staphylococcus aureus subsp. aureus str. Newman [B] 1     1653, 1742   664    
Genome ID Organism Variant Code R1 R6 R4 R4? R2 R3 R5
426430.6 Staphylococcus aureus subsp. aureus str. Newman [B] 1     1478, 1561   602    

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