Spreadsheet for Subsystem: Respiration HGM

Limit display of the the genomes in the table based on phylogeny or one of the preselected groups in the left box. Limit display of roles via their subsets and decide which subsets you want to uncollapse in the right box:

Limit displayed Genomes Phylogeny Specific Sets User Sets All 'Acetobacter pasteurianus' 'Acinetobacter baumannii' 'Acinetobacter baumannii' 'Acinetobacter calcoaceticus/baumannii complex' 'Actinobacillus pleuropneumoniae' 'Actinobacteria (class)' 'Aeromonas hydrophila' 'Aggregatibacter actinomycetemcomitans' 'Anaplasma marginale' 'Aquificae (class)' 'Bacillus amyloliquefaciens' 'Bacillus anthracis' 'Bacillus atrophaeus' 'Bacillus cereus group' 'Bacillus cereus' 'Bacillus subtilis group' 'Bacillus subtilis subsp. subtilis' 'Bacillus subtilis' 'Bacillus thuringiensis' 'Bacteroides fragilis' 'Bacteroidetes/Chlorobi group' 'Bifidobacterium longum' 'Borrelia burgdorferi group' 'Borrelia burgdorferi' 'Brucella abortus bv. 1' 'Brucella abortus' 'Brucella melitensis' 'Brucella ovis' 'Brucella suis' 'Buchnera aphidicola (Acyrthosiphon pisum)' 'Buchnera aphidicola' 'Burkholderia cenocepacia' 'Burkholderia cepacia complex' 'Burkholderia mallei' 'Burkholderia pseudomallei' 'Campylobacter coli' 'Campylobacter jejuni subsp. jejuni' 'Campylobacter jejuni' 'Chlamydia psittaci' 'Chlamydia trachomatis' 'Chlamydia trachomatis' 'Chlamydia/Chlamydophila group' 'Chlamydiae (class)' 'Chlamydiae/Verrucomicrobia group' 'Chlorobium/Pelodictyon group' 'Chloroflexi (class)' 'Clostridiales Family XI. Incertae Sedis' 'Clostridiales incertae sedis' 'Clostridium botulinum' 'Clostridium difficile' 'Clostridium perfringens' 'Corynebacterium diphtheriae' 'Coxiella burnetii' 'Cronobacter sakazakii' 'Enterobacter cloacae complex' 'Enterobacter cloacae' 'Enterococcus faecalis' 'Enterococcus faecium' 'Erwinia amylovora' 'Escherichia coli O104:H4' 'Escherichia coli O157' 'Escherichia coli O157:H7' 'Escherichia coli' 'Fibrobacteres/Acidobacteria group' 'Francisella tularensis subsp. tularensis' 'Francisella tularensis' 'Fungi/Metazoa group' 'Fusobacteria (class)' 'Fusobacterium nucleatum' 'Gardnerella vaginalis' 'Haemophilus influenzae' 'Helicobacter pylori' 'Klebsiella oxytoca' 'Klebsiella pneumoniae subsp. pneumoniae' 'Klebsiella pneumoniae' 'Lactobacillus casei group' 'Lactobacillus casei' 'Lactobacillus gasseri' 'Lactobacillus iners' 'Lactobacillus paracasei subsp. paracasei' 'Lactobacillus paracasei' 'Lactobacillus plantarum' 'Lactobacillus reuteri' 'Lactobacillus rhamnosus' 'Lactococcus garvieae' 'Lactococcus lactis' 'Legionella pneumophila' 'Leptospira borgpetersenii' 'Leptospira interrogans serovar Copenhageni' 'Leptospira interrogans serovar Copenhageni' 'Leptospira interrogans' 'Leptospira interrogans' 'Leptospira kirschneri' 'Leptospira santarosai' 'Listeria monocytogenes' 'Moraxella catarrhalis' 'Mycobacterium abscessus subgroup' 'Mycobacterium abscessus' 'Mycobacterium bovis' 'Mycobacterium chelonae group' 'Mycobacterium massiliense' 'Mycobacterium tuberculosis complex' 'Mycobacterium tuberculosis complex' 'Mycobacterium tuberculosis' 'Mycobacterium tuberculosis' 'Mycoplasma mycoides group' 'Neisseria gonorrhoeae' 'Neisseria meningitidis' 'Oenococcus oeni' 'Prochlorococcus marinus' 'Propionibacterium acnes' 'Pseudomonas aeruginosa group' 'Pseudomonas aeruginosa' 'Pseudomonas fluorescens group' 'Pseudomonas fluorescens' 'Pseudomonas putida group' 'Pseudomonas putida' 'Pseudomonas stutzeri group' 'Pseudomonas stutzeri subgroup' 'Pseudomonas stutzeri' 'Pseudomonas syringae group genomosp. 1' 'Pseudomonas syringae group' 'Pseudomonas syringae' 'Rhizobium leguminosarum bv. viciae' 'Rhizobium leguminosarum' 'Rhizobium/Agrobacterium group' 'Rhodopseudomonas palustris' 'Rickettsia prowazekii' 'Rickettsia rickettsii' 'Salinispora arenicola' 'Salinispora pacifica' 'Salmonella enterica subsp. enterica serovar Agona' 'Salmonella enterica subsp. enterica serovar Enteritidis' 'Salmonella enterica subsp. enterica serovar Heidelberg' 'Salmonella enterica subsp. enterica serovar Montevideo str.' 'Salmonella enterica subsp. enterica serovar Montevideo' 'Salmonella enterica subsp. enterica serovar Newport' 'Salmonella enterica subsp. enterica serovar Typhi' 'Salmonella enterica subsp. enterica serovar Typhimurium' 'Salmonella enterica subsp. enterica' 'Salmonella enterica' 'Shewanella baltica' 'Shigella flexneri' 'Sinorhizobium meliloti' 'Sinorhizobium/Ensifer group' 'Spirochaetes (class)' 'Staphylococcus aureus subsp. aureus' 'Staphylococcus aureus' 'Staphylococcus epidermidis' 'Streptococcus agalactiae' 'Streptococcus anginosus group' 'Streptococcus dysgalactiae group' 'Streptococcus mitis' 'Streptococcus mutans' 'Streptococcus oralis' 'Streptococcus pneumoniae' 'Streptococcus pyogenes' 'Streptococcus sanguinis' 'Streptococcus suis' 'Thermoanaerobacterales Family III. Incertae Sedis' 'Thermotogae (class)' 'Ureaplasma urealyticum' 'Vibrio cholerae O1' 'Vibrio cholerae' 'Vibrio cyclitrophicus' 'Vibrio harveyi group' 'Vibrio splendidus' 'Vibrio vulnificus' 'Xanthomonas axonopodis pv. manihotis' 'Xanthomonas axonopodis' 'Xanthomonas campestris' 'Xylella fastidiosa' 'Yersinia enterocolitica subsp. palearctica' 'Yersinia enterocolitica' 'Yersinia pestis' 'Yersinia pseudotuberculosis' 'delta/epsilon subdivisions' 'pseudomallei group' 'spotted fever group' 'typhus group' 'unclassified Alphaproteobacteria' 'unclassified Bacteria' 'unclassified Enterobacteriaceae' 'unclassified Erysipelotrichaceae' 'unclassified Gammaproteobacteria (miscellaneous)' 'unclassified Gammaproteobacteria' 'unclassified Lachnospiraceae' Acetobacter Acetobacteraceae Acidobacteria Acidovorax Acinetobacter Actinobacillus Actinobacteria Actinobacteria Actinobacteridae Actinobacteridae Actinomyces Actinomyces Actinomycetaceae Actinomycetaceae Actinomycetales Actinomycetales Actinomycineae Actinomycineae Aeromonadaceae Aeromonadales Aeromonas Aggregatibacter Agrobacterium Alcaligenaceae Alphaproteobacteria Alteromonadaceae Alteromonadales Amycolatopsis Anaerococcus Anaplasma Anaplasmataceae Aquificae Aquificales Archaea Arthrobacter Ascomycota Bacillaceae Bacillales Bacilli Bacillus Bacteria Bacteroidaceae Bacteroidales Bacteroides Bacteroidetes Bacteroidia Bartonella Bartonellaceae Betaproteobacteria Bifidobacteriaceae Bifidobacteriaceae Bifidobacteriales Bifidobacteriales Bifidobacterium Bifidobacterium Bilateria Bordetella Borrelia Bradyrhizobiaceae Bradyrhizobium Branhamella Brevibacillus Brucella Brucellaceae Buchnera Burkholderia Burkholderiaceae Burkholderiales Campylobacter Campylobacteraceae Campylobacterales Caulobacteraceae Caulobacterales Chlamydia Chlamydia Chlamydiaceae Chlamydiaceae Chlamydiae Chlamydiales Chlamydiales Chlamydiia Chlamydophila Chlorobi Chlorobia Chlorobiaceae Chlorobiales Chlorobium Chloroflexales Chloroflexi Chordata Chromatiaceae Chromatiales Chroococcales Citrobacter Clostridia Clostridiaceae Clostridiales Clostridium Coelomata Comamonadaceae Coriobacteriaceae Coriobacteriales Coriobacteridae Coriobacterineae Corynebacteriaceae Corynebacteriaceae Corynebacterineae Corynebacterineae Corynebacterium Corynebacterium Coxiella Coxiellaceae Crenarchaeota Cronobacter Cupriavidus Cyanobacteria Cyanothece Cystobacterineae Cytophagaceae Cytophagales Cytophagia Deinococcaceae Deinococcales Deinococci Deinococcus Deinococcus-Thermus Deltaproteobacteria Desulfitobacterium Desulfobacterales Desulfotomaculum Desulfovibrio Desulfovibrionaceae Desulfovibrionales Desulfuromonadales Deuterostomia Dickeya Dikarya Ectothiorhodospiraceae Embryophyta Enterobacter Enterobacteriaceae Enterobacteriales Enterococcaceae Enterococcus Epsilonproteobacteria Erwinia Erysipelotrichaceae Erysipelotrichales Erysipelotrichi Escherichia Eubacteriaceae Eubacterium Eukaryota Eumetazoa Euphyllophyta Euryarchaeota Firmicutes Flavobacteria Flavobacteriaceae Flavobacteriaceae Flavobacteriales Flavobacteriales Flavobacteriia Flavobacterium Francisella Francisellaceae Frankia Frankiaceae Frankineae Fungi Fusobacteria Fusobacteriaceae Fusobacteriaceae Fusobacteriales Fusobacteriales Fusobacteriia Fusobacterium Fusobacterium Gammaproteobacteria Gardnerella Geobacillus Geobacter Geobacteraceae Glaciecola Gordonia Gordoniaceae Haemophilus Halobacteria Halobacteriaceae Halobacteriales Halomonadaceae Halomonas Helicobacter Helicobacteraceae Hyphomonadaceae Klebsiella Lachnospiraceae Lactobacillaceae Lactobacillales Lactobacillus Lactococcus Legionella Legionellaceae Legionellales Leptospira Leptospira Leptospiraceae Leptospiraceae Leuconostoc Leuconostocaceae Listeria Listeriaceae Magnoliophyta Marinobacter Mesorhizobium Metazoa Methanomicrobia Methylobacteriaceae Methylobacterium Methylococcaceae Methylococcales Methylophilaceae Methylophilales Microbacteriaceae Micrococcaceae Micrococcaceae Micrococcineae Micrococcineae Micromonosporaceae Micromonosporaceae Micromonosporineae Micromonosporineae Mollicutes Mollicutes Moraxella Moraxellaceae Mycobacteriaceae Mycobacteriaceae Mycobacterium Mycobacterium Mycoplasma Mycoplasma Mycoplasmataceae Mycoplasmataceae Mycoplasmatales Mycoplasmatales Myxococcaceae Myxococcales Negativicutes Neisseria Neisseriaceae Neisseriales Nitrosomonadaceae Nitrosomonadales Nocardia Nocardiaceae Nocardiopsaceae Nocardiopsis Nostocaceae Nostocales Oceanospirillales Oenococcus Oscillatoriales Oxalobacteraceae Paenibacillaceae Paenibacillus Pantoea Parabacteroides Pasteurella Pasteurellaceae Pasteurellales Peptococcaceae Peptoniphilus Peptostreptococcaceae Phyllobacteriaceae Piscirickettsiaceae Planctomycetaceae Planctomycetaceae Planctomycetacia Planctomycetales Planctomycetales Planctomycetes Planctomycetia Planococcaceae Porphyromonadaceae Porphyromonas Prevotella Prevotellaceae Prochlorales Prochlorococcaceae Prochlorococcus Propionibacteriaceae Propionibacteriaceae Propionibacterineae Propionibacterineae Propionibacterium Propionibacterium Proteobacteria Pseudoalteromonadaceae Pseudoalteromonas Pseudomonadaceae Pseudomonadales Pseudomonas Pseudonocardiaceae Pseudonocardineae Pseudonocardineae Ralstonia Rhizobiaceae Rhizobiales Rhizobium Rhodobacter Rhodobacteraceae Rhodobacterales Rhodococcus Rhodocyclaceae Rhodocyclales Rhodopseudomonas Rhodospirillaceae Rhodospirillales Rickettsia Rickettsiaceae Rickettsiales Rickettsieae Ruminococcaceae Ruminococcus Salinispora Salmonella Selenomonadales Selenomonas Serratia Shewanella Shewanellaceae Shigella Sinorhizobium Spermatophyta Sphingobacteria Sphingobacteriales Sphingobacteriales Sphingobacteriia Sphingobium Sphingomonadaceae Sphingomonadales Sphingomonas Spirochaetaceae Spirochaetaceae Spirochaetales Spirochaetales Spirochaetes Spirochaetia Staphylococcaceae Staphylococcus Stenotrophomonas Streptococcaceae Streptococcus Streptomyces Streptomyces Streptomycetaceae Streptomycetaceae Streptomycineae Streptomycineae Streptophyta Streptophytina Streptosporangineae Synechococcus Synergistaceae Synergistales Synergistetes Synergistia Tenericutes Thermaceae Thermales Thermoanaerobacter Thermoanaerobacteraceae Thermoanaerobacterales Thermoprotei Thermotoga Thermotogaceae Thermotogae Thermotogales Thermus Thioalkalivibrio Thiotrichales Tracheophyta Treponema Treponema Ureaplasma Ureaplasma Veillonellaceae Veillonellaceae Verrucomicrobia Vibrio Vibrionaceae Vibrionales Viridiplantae Wolbachia Wolbachieae Xanthomonadaceae Xanthomonadales Xanthomonas Xylella Yersinia All Phage NMPDR BRC Hundred by a hundred Eukaryotic virus All ADHanson_ADH_TenA-ThiD_2nd_half ADHanson_ADH_TenA-ThiD Enriquez_Amber_user_cob_clusters AndreiO_Microbiome_set1 El_Yacoubi_Basma_user_S2 rodionov_margovan_SvetaG_Human_Microbiome_Project_March2014 El_Yacoubi_Basma_user_yggS_duplication_cara Joseph_Jennifer_user_Dpd_rep Joseph_Jennifer_user_atypical_dpd Kutt_Laura_user_HGM_I Kutt_Laura_user_HGM_II Kutt_Laura_user_Human_Gut_Microbes Li_Feng_user_piR020582_FL Magnusdottir_Stefania_user_Addit Magnusdottir_Stefania_user_Set1 Magnusdottir_Stefania_user__StefMag_GMicrobes Magnusdottir_Stefania_user_missing Nguyen_Phuong_user_List_genome Niehaus_Tom_user_cog2945_CDS OlgaZ_Thermotogales Ravcheev_Dmitry_user_6_model_organisms Ravcheev_Dmitry_user_AGORA Ravcheev_Dmitry_user_HMP_GItract Ravcheev_Dmitry_user_HumanGut Ravcheev_Dmitry_user_HumanGut_Short Ravcheev_Dmitry_user_Human_non-gut Ravcheev_Dmitry_user_ModelOrganisms RossO_BrucellaGenomes Rusconi_Brigida_user_vibrio_nonO1 Summers_Michael_user_Cyanos SvetaG_1000_Diverse_Prokaryotic_genomes_2013 SvetaG_1600_Representative_Eubacterial_Genomes SvetaG_1000_diverse_Prokaryotic_genomes_2013~ SvetaG_80_reps SvetaG_CoreSEED_genomes_2014 SvetaG_Ess-ty_data_available SvetaG_Essentiality_data_available SvetaG_Global_expression_correlations_available SvetaG_Human_Microbiome_Project_March2014 SvetaG_Human_Microbiome_Project_Oct_2011 SvetaG_anno3_genomes SvetaG_global_expression_correlations_available SvetaG_representative_Streptococci SvetaG_test Thamm_Antje_user_NadD-ribosomal Thiaville_Patrick_user_patthia_diverse_t6A Thiaville_Patrick_user_patthia_potentially-loss_B Wheatley_Nicole_user_proteo_alpha_carboxy ZALLOT_Remi_user_TenA _1000_Diverse_Prokaryotic_genomes_2013 _2YggSProC _AMP_Kinases _Ectothiorhodospiraceae _Ectothiorhodospiraceae2 _StefMag_GMicrobes _StefMag_GutMics_Full _StefMag_smallList __patthia_taxon-diverse-bacteria _patthia-diverse-tsa margovan_SvetaG_Human_Microbiome_Project_March2014 margovan_SvetaG_Human_Microbiome_Project_Oct_2011 rodionov_Gordon rodionov_Gordon-2 rodionov_Gordon_NEW rodionov_RG_Malawi vcrecy_ForItol_2016 vcrecy_ArchaeaDuf71A vcrecy_InesSet1 vcrecy_MaizeWorkshopItol vcrecy_Symbiont rodionov_Gordon_LiHui_Succession_strains Niehaus_Tom_user_70_diverse ZALLOT_Remi_user_PreQ0salvage ZALLOT_Remi_user_pReq0salavgetrue ZALLOT_Remi_user_qsalvage ZALLOT_Remi_user_queuinedenovo _Thi4_containing_genomes vcrecy_tRNA_mod_data Sun_Jiayi_user_Methyltransferase_11_Thiamin vcrecy_selectionForItol Ravcheev_Dmitry_user_AGORA2_NewGenomes Ravcheev_Dmitry_user_AGORA2_NewGenomes2 Ravcheev_Dmitry_user_AGORA2_NewGenomes3 vcrecy_YaaA_Oxidative_stress Babor_Jill_user_No_pathway

Limit displayed Functional Roles   Show Subsets Uncollapse All FRSD SULF *Sdh *Nos *Hyf *Aio *Cyf *Asr *Tsr DSTOR *Nap *Cco *Phs *Ebd *Cyo *Ynf *Nor HYDR *Ydh *cHdr *mHdr *Cta *Dms *Coo *Tor *Ech *Pcr *Qcr *Qmo *Apr *Psr *Arr NITR *Mbh *Predict *NasFED *Qox *Dsr *Nrf *Hyc *dNir *Nar ARS OXY *NarT *Ttr *Frd *Arx *Nas *aNir *Cyd None All *Sdh *Nos *Hyf *Aio *Cyf *Asr *Tsr *Nap *Cco *Phs *Ebd *Cyo *Ynf *Nor *Ydh *cHdr *mHdr *Cta *Dms *Coo *Tor *Ech *Pcr *Qcr *Qmo *Apr *Psr *Arr *Mbh *Predict *NasFED *Qox *Dsr *Nrf *Hyc *dNir *Nar *NarT *Ttr *Frd *Arx *Nas *aNir *Cyd