| Genome | Info | Size | Data | Institution | Funding | Databases | Publication | Contact |
Acinetobacter
calcoaceticus
ADP1 | GAMMA-PROTEOBACTERIA
Taxonomy
| 3598 Kb
3303 orfs
MAP | NC_005966
CR543861
| Genoscope
| Genoscope
| NCBI
Integr8
Genoscope
Superfamily
Entrez
| NAR
32, 5766-5779
2004-07-09 | Barbe V |
|---|
Actinobacillus
actinomycetemcomitans
HK1651 | GAMMA-PROTEOBACTERIA
Taxonomy
Disease
Entrez
| 2105 Kb
| | Univ of Oklahoma
| NIDCR
| NCBI
Univ of Oklahoma
Oklahoma Univ Health Sciences Center
LANL
| complete | Roe B |
|---|
Actinobacillus
pleuropneumoniae
serovar 1 str.4074 | GAMMA-PROTEOBACTERIA
Taxonomy
Entrez
| 2128 Kb
| | Univ of Oklahoma
| | NCBI
Oklahoma Univ Health Sciences Center
| incomplete | Dyer DW |
|---|
Aeropyrum
pernix
K1 | CRENARCHAEA
Taxonomy
ArchaeaWeb
GNN_report
Karyn's Genomes
| 1669 Kb
2620 orfs
MAP | NC_000854
| NITE
| NITE
| NCBI
Integr8
NITE
PEDANT
KEGG
GCat
IBM-Annotation
GIB
TIGR
Entrez
| DNA Research
6,83-101
1999-04-30 | Kawarabayasi Y |
|---|
Anabaena
variabilis
ATCC29413 | CYANOBACTERIA
Taxonomy
Entrez
| 8000 Kb
| | Joint Genome Institute
Univ of Missouri
| DOE
| NCBI
Joint Genome Institute
| complete | Thiel T |
|---|
Anabaena
variabilis
ATCC29413 | CYANOBACTERIA
Taxonomy
Entrez
| 8000 Kb
| | Joint Genome Institute
Univ of Missouri
| DOE
| NCBI
Joint Genome Institute
| complete | Thiel T |
|---|
Anaerobranca
gottschalkii (bogoriae)
AZ 13040/09 | FIRMICUTES
Taxonomy
Isolation
|
| | TU Hamburg-Harburg
|
|---|
| Anopheles gambiae (African malaria mosquito) |
|---|
Anopheles
gambiae
PEST | ARTHROPODA
Taxonomy
GNN_report
WHO-Malaria
AnoDB-WWW
Malaria
AMCA
Mosquito/Parasite Interactions
Malaria-www
Mosquito Genomics
Karyn's Genomes
| 278000 Kb
14000 orfs
| AAAB01000000
| Celera
Genoscope
| NIAID
| NCBI
Integr8
Genoscope
AnoDB
Institut Pasteur
TIGR
| Science
298, 129-149
2002-10-04 | AnoDB |
|---|
Aquifex
aeolicus
VF5 | AQUIFICAE
Taxonomy
Thermophilic
GNN_report
Karyn's Genomes
| 1551 Kb
1544 orfs
MAP | NC_000918
AE000657
| Univ of Illinois at Urbana-Champaign
Diversa
| DOE
Diversa
| NCBI
Integr8
PEDANT
KEGG
GIB
GCat
IBM-Annotation
MBGD
TIGR
Entrez
| Nature
392,353-358
1998-03-26 | Swanson RV |
|---|
Arabidopsis
thaliana
| PLANTS
Taxonomy
GNN_report
Arabinet
TAIR
AtGI
cDNA @ UMN
Knock-out
| 115428 Kb
25498 orfs
| 5 chromosomes
| International Collaboration
| NSF
USDA
DOE
KDRI
European Union
| NCBI
MIPS
KAOS
Univ of Minnesota
CSHL
SPP Consortium
TIGR
UKcrop
GIB
Integr8
KEGG
| Nature
408,796-815
2000-12-14 | TIGR |
|---|
Archaeoglobus
fulgidus
DSM 4304 | EURYARCHAEA
Taxonomy
Codon Usage
ATCC
ArchaeaWeb
GNN_report
Karyn's Genomes
| 2178 Kb
2493 orfs
MAP | NC_000917
| Univ of Illinois at Urbana-Champaign
TIGR
| DOE
| NCBI
Integr8
TIGR
KEGG
PEDANT
GCat
IBM-Annotation
GIB
Entrez
| Nature
390,364-370
1997-11-27 | TIGR |
|---|
Ashbya (Eremothecium)
gossypii
| FUNGI
7 Chromosomes
Taxonomy
Publication
| 9000 Kb
4720 orfs
| NC_005782-9
| Basel Univ
Syngenta AG
| | NCBI
Integr8
AGD
| Science
304, 304-7
2004-03-04 | Philippsen P |
|---|
Azotobacter
vinelandii
AvOP | GAMMA-PROTEOBACTERIA
Taxonomy
Entrez
| 4500 Kb
| | Univ of Arizona
Joint Genome Institute
| DOE
| NCBI
Joint Genome Institute
| incomplete | Kennedy C |
|---|
| Bacillus anthracis str. 'Ames Ancestor' |
|---|
| Bacillus anthracis str. Sterne |
|---|
| Bacillus cereus G9241 |
|---|
| Bacillus halodurans C-125 |
|---|
Bacillus
anthracis
Ames | FIRMICUTES
Taxonomy
Antibiotics
Anthrax
BIOWAR
Anthrax FAQ
DOE-report
GNN_report
| 5227 Kb
5738 orfs
MAP | NC_003997
AE016877
| TIGR
| ONR
DOE
NIAID
| NCBI
Integr8
ERGO
| Nature
423, 81-86
2003-05-01 | Read TD |
|---|
Bacillus
anthracis
WesternNAUSA6153(A0071,GT3GroupA1a) | FIRMICUTES
Taxonomy
Antibiotics
Anthrax
BIOWAR
Anthrax FAQ
|
| | TIGR
| NIAID
| NCBI
Entrez
| incomplete | Read TD |
|---|
Bacillus
anthracis (Florida isolate)
A2012 | FIRMICUTES
Taxonomy
Antibiotics
Anthrax
BIOWAR
Anthrax FAQ
| 5093 Kb
5544 orfs | | TIGR
| DOE
| NCBI
TIGR
ERGO
| complete | Read TD |
|---|
Bacillus
cereus
ATCC 10987 | FIRMICUTES
Taxonomy
ISME
CFSAN
UCDavis
| 5432 Kb
5818 orfs
MAP | NC_003909
AE017194
| TIGR
| ONR
NIAID
| NCBI
Integr8
Entrez
| NAR
32, 977-988
2004-02-11 | Read T |
|---|
Bacillus
cereus
ATCC 14579 | FIRMICUTES
Taxonomy
ATCC
ISME
CFSAN
UCDavis
GNN_report
| 5411 Kb
5477 orfs
MAP | NC_004722
AE016877
| Integrated Genomics Inc
INRA
| DARPA
| NCBI
Integr8
ERGO
Entrez
| Nature
423, 87-91
2003-05-01 | Ivanova N |
|---|
Bacillus
sp
NRRLB-14911 | ACTINOBACTERIDAE
Taxonomy
Isolation
Information
| 5000 Kb
| | Rice univ
J Craig Venter Institute
| Moore Foundation
| | incomplete | Siefert J |
|---|
Bacillus
subtilis
168 | FIRMICUTES
Taxonomy
Microbook
GNN_report
Karyn's Genomes
| 4214 Kb
4099 orfs
MAP | NC_000964
AL009126
| European Consortium
Japanese Consortium
| EC
| NCBI
Integr8
SubtiList
GIB
KEGG
SWISS
PEDANT
INDIGO
MICADO
GCat
IBM-Annotation
MBGD
TIGR
| Nature
390,249-256
1997-11-20 | Kunst F |
|---|
Bacillus
thuringiensis serovar konkukian
97-27 | FIRMICUTES
Taxonomy
Karyn's Genomes
| 5237 Kb
5083 orfs
MAP | NC_005957
AE017355
| Joint Genome Institute
Los Alamos National Laboratory
| DOE
| NCBI
Integr8
Entrez
| Unpublished
2004-06-30 | Gilna P |
|---|
Bacteriovorax
marinus
SJ | DELTA-PROTEOBACTERIA
Taxonomy
| 2600 Kb
| | Sanger Institute
Univ of Maryland
Morgan State Univ
| Wellcome Trust
| Sanger Institute
Entrez
| complete | Parkhill J |
|---|
Bacteroides
fragilis
NCTC9343 (ATCC 25285) | BACTEROIDETES
Taxonomy
Antibiotics
Entrez
ATCC 25285
| 5200 Kb
4274 orfs
| NC_003228
| Sanger Institute
Queen's Univ of Belfast
Univ of Wales
Univ of Edinburgh
| Beowulf Genomics
| NCBI
Sanger Institute
| Science
5714, 1463-1465
2005-03-04 | Parkhill J |
|---|
Bacteroides
fragilis
NCTC9343 (ATCC 25285) | BACTEROIDETES
Taxonomy
Antibiotics
Entrez
ATCC 25285
| 5200 Kb
4274 orfs
| NC_003228
| Sanger Institute
Queen's Univ of Belfast
Univ of Wales
Univ of Edinburgh
| Beowulf Genomics
| NCBI
Sanger Institute
| Science
5714, 1463-1465
2005-03-04 | Parkhill J |
|---|
Bacteroides
thetaiotaomicron
VPI-5482 | BACTEROIDETES
Taxonomy
GNN_report
| 6260 Kb
4779 orfs
| NC_004663
AE015928
| Washington Univ
AstraZeneca
| AstraZeneca
NIH
| NCBI
Integr8
Entrez
| Science
299, 2074-6
2003-03-28 | Gordon JI |
|---|
| Bartonella henselae str. Houston-1 |
|---|
| Bartonella quintana str. Toulouse |
|---|
Bartonella
henselae
Houston-1 | ALPHA-PROTEOBACTERIA
Taxonomy
ATCC
| 1931 Kb
1465 orfs
MAP | NC_005956
BX897699
| Uppsala Univ
| SSF
| NCBI
Integr8
Uppsala Univ
Entrez
| PNAS
101, 9716-21
2004-06-21 | Andersson S |
|---|
| Bdellovibrio bacteriovorus HD100 |
|---|
Bifidobacterium
longum
NCC2705 | ACTINOBACTERIDAE
Taxonomy
16s rRNA
GNN_report
| 2256 Kb
1813 orfs
MAP | NC_004307
AE014295
| Nestle
Univ of Georgia
| Nestle
| NCBI
Integr8
TIGR
Entrez
| PNAS
99,14422-14427
2002-10-29 | Schell MA |
|---|
Bifidobacterium
longum
DJO10A | ACTINOBACTERIDAE
Taxonomy
Entrez
| 2100 Kb
| | Univ of Minnesota
Joint Genome Institute
| DOE
| NCBI
Joint Genome Institute
Entrez
| incomplete | O'Sullivan D |
|---|
Blochmannia
floridanus
| GAMMA-PROTEOBACTERIA
Taxonomy
| 705 Kb
1730 orfs
MAP | NC_005061
BX248583
| Univ of Valencia
| MEC
EU
| NCBI
Integr8
Entrez
| PNAS
100, 9388-93
2003-08-05 | Moya A |
|---|
| Bordetella bronchiseptica RB50 |
|---|
| Bordetella parapertussis 12822 |
|---|
Bordetella
pertussis
Tohama I NCTC-13251 | BETA-PROTEOBACTERIA
Taxonomy
ATCC BAA-589
Bp website
Microbook
Bordetella
MDS
GNN_report
| 4086 Kb
3816 orfs
MAP | NC_002929
BX470248
| Sanger Institute
Univ of Cambridge
| Beowulf Genomics
| NCBI
Integr8
Sanger Institute
MDS
Entrez
| Nature Genetics
35, 32-40
2003-08-10 | Parkhill J |
|---|
Borrelia
burgdorferi
B31 | SPIROCHAETES
Taxonomy
Antibiotics
spirochetes
Borrelia
Brookhaven Natl Lab
Lyme Disease
GNN_report
Karyn's Genomes
| 1230 Kb
1256 orfs
MAP | NC_001318
AE000783
| Brookhaven Natl Lab
TIGR
| NIH
| NCBI
Integr8
TIGR
KEGG
PEDANT
GCat
IBM-Annotation
MBGD
GIB
BNL
Entrez
| Nature
390,580-586
1997-12-11 | Fraser CM |
|---|
Borrelia
garinii
PBi | SPIROCHAETES
Taxonomy
Karyn's Genomes
| 986 Kb
932 orfs
MAP | NC_006156
CP000013
| IMB, Jena
| | NCBI
Integr8
SGB
Entrez
| NAR
32, 6038-6046
2004-08-30 | Glockner G |
|---|
Bradyrhizobium
japonicum
USDA110 | ALPHA-PROTEOBACTERIA
Taxonomy
About USDA110
GNN_report
| 9105 Kb
8317 orfs
MAP | NC_004463
BA000040
| Kazusa DNA Research Institute
| KDRI
| NCBI
Integr8
Kazusa
TIGR
Entrez
| DNA Research
9, 189-97
2002-12-31 | Kaneko, T |
|---|
Brucella
melitensis biovar suis
1330 | ALPHA-PROTEOBACTERIA
Taxonomy
GNN_report
| 3310 Kb
3388 orfs
MAP | NC_004310
NC_004311
AE014291
AE014292
| TIGR
| DARPA
NIAID
U01 AI49036
| NCBI
Integr8
TIGR
Entrez
| PNAS
99, 13148-13153
2002-10-01 | Paulsen I |
|---|
Brucella
melitensis
16M | ALPHA-PROTEOBACTERIA
Taxonomy
ATCC 23456
Pathogenesis
WorldMedicus
Brucella Home Page
GNN_report
| 3294 Kb
3197 orfs
MAP | NC_003317
NC_003318
AE008917
AE008918
| Univ of Scranton
Integrated Genomics Inc
| DARPA
| NCBI
Integr8
Univ of Scranton
ERGO
GIB
KEGG
TIGR
Entrez
| PNAS
99,443-448
2002-01-08 | DelVecchio VG |
|---|
Buchnera
aphidicola
AP (Acyrthosiphon pisum) | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
Karyn's Genomes
| 640 Kb
564 orfs
MAP | NC_002528
BA000003
| Univ of Tokyo
RIKEN
| Pro BRAIN
MEXT
| NCBI
Integr8
RIKEN
GIB
TIGR
KEGG
Entrez
| Nature
407, 81-86
2000-09-07 | Ishikawa H |
|---|
Buchnera
aphidicola
BP (Baizongia pistaciae) | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
| 618 Kb
504 orfs
MAP | NC_004545
AE016826
| Centro de Astrobiologia, Spain
Valencia Univ
CNB
| European Social Funds
| NCBI
Integr8
CNB
TIGR
Entrez
| PNAS
100, 581-586
2003-01-21 | Moya A |
|---|
Buchnera
aphidicola
SG (Schizaphis graminum) | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
| 641 Kb
545 orfs
MAP | NC_004061
AE013218
| Univ of Uppsala
| NSF
| NCBI
Integr8
Univ of Uppsala
TIGR
Entrez
| Science
296, 2376-2379
2002-06-28 | Andersson SG |
|---|
| Burkholderia fungorum |
|---|
| Burkholderia pseudomallei K96243 |
|---|
| Burkholderia xenovorans LB400 |
|---|
Burkholderia
cenocepacia
J2315 | BETA-PROTEOBACTERIA
Taxonomy
in the environment
International working group
Bcepacia AC1100
Common Questions
Pathogenesis
Agricultural Use
| 7600 Kb
| | Sanger Institute
Cardiff Univ
Univ of Edinburgh
Univ Gent
| Beowulf Genomics
| NCBI
Sanger Institute
Entrez
| complete | Parkhill J |
|---|
Burkholderia
cenocepacia
J2315 | BETA-PROTEOBACTERIA
Taxonomy
in the environment
International working group
Bcepacia AC1100
Common Questions
Pathogenesis
Agricultural Use
| 7600 Kb
| | Sanger Institute
Cardiff Univ
Univ of Edinburgh
Univ Gent
| Beowulf Genomics
| NCBI
Sanger Institute
Entrez
| complete | Parkhill J |
|---|
Burkholderia
cepacia 383
R18194, ATCC 17660 | BETA-PROTEOBACTERIA
Taxonomy
Entrez
| 8500 Kb
| | Joint Genome Institute
| DOE
| NCBI
Joint Genome Institute
| incomplete | Tiedje J |
|---|
Burkholderia
vietnamiensis
CF | BETA-PROTEOBACTERIA
Taxonomy
| 9000 Kb
| | Joint Genome Institute
Michigan State Univ
| DOE
| | incomplete | Tiedje J |
|---|
Burkholderia
vietnamiensis
CF | BETA-PROTEOBACTERIA
Taxonomy
| 9000 Kb
| | Joint Genome Institute
Michigan State Univ
| DOE
| | incomplete | Tiedje J |
|---|
Burkholderia
vietnamiensis
G4 (R1808) | BETA-PROTEOBACTERIA
Taxonomy
Entrez
| 8200 Kb
| | Joint Genome Institute
| DOE
| NCBI
Joint Genome Institute
| incomplete | Tiedje J |
|---|
Burkholderia
vietnamiensis
CF | BETA-PROTEOBACTERIA
Taxonomy
| 9000 Kb
| | Joint Genome Institute
Michigan State Univ
| DOE
| | incomplete | Tiedje J |
|---|
Burkholderia
vietnamiensis
G4 (R1808) | BETA-PROTEOBACTERIA
Taxonomy
Entrez
| 8200 Kb
| | Joint Genome Institute
| DOE
| NCBI
Joint Genome Institute
| incomplete | Tiedje J |
|---|
Burkholderia
vietnamiensis
rhizosphere colonizer | BETA-PROTEOBACTERIA
Taxonomy
| 9000 Kb
| | Joint Genome Institute
Michigan State Univ
| DOE
| | incomplete | Tiedje J |
|---|
Burkholderia
xenovorans (fungorum)
LB400 (NRRL B-18064) | BETA-PROTEOBACTERIA
Taxonomy
in the environment
International working group
Bcepacia AC1100
Common Questions
Pathogenesis
Image
Entrez
| 8000 Kb
| | Joint Genome Institute
| DOE
| NCBI
Joint Genome Institute
|
|---|
Caenorhabditis
elegans
| NEMATODES
Taxonomy
ACeDB
EST database
CeGI
GNN_report
| 97000 Kb
19099 orfs
| 6 chromosomes
| Washington Univ
Sanger Institute
| NHGRI
MRC
| NCBI
Washington Univ
Sanger Institute
PEDANT
SWISS
Genequiz
Integr8
KEGG
IBM-Annotation
NEXTDB
| Science
282,2012-2018
1998-12-11 | WUSTL |
|---|
| Campylobacter coli RM2228 |
|---|
| Campylobacter lari RM2100 |
|---|
| Campylobacter upsaliensis RM3195 |
|---|
Campylobacter
jejuni subsp. jejuni
NCTC 11168 | EPSILON-PROTEOBACTERIA
Taxonomy
C.jejuni world
Disease
FAQ
Cj website
Beowulf Genomics
Microbook
MDS
Food
ATCC
MLST
GNN_report
Karyn's Genomes
| 1641 Kb
1654 orfs
MAP | NC_002163
AL111168
| Sanger Institute
LSHTM
Univ of Leicester
| Beowulf Genomics
| NCBI
Integr8
Sanger Institute
PEDANT
IBM-Annotation
KEGG
MBGD
GIB
TIGR
Entrez
| Nature
403,665-668
2000-02-10 | Parkhill J |
|---|
Campylobacter
jejuni
RM1221 (ATCC BAA-1062) | EPSILON-PROTEOBACTERIA
Taxonomy
MLST
| 1809 Kb
1884 orfs
MAP | NC_003912
CP000025
| TIGR
| USDA
| NCBI
Entrez
| PLoS Biol.
in press
2005-01-07 | TIGR |
|---|
| Canis familiaris (dog) |
|---|
Caulobacter
crescentus
CB15 | ALPHA-PROTEOBACTERIA
Taxonomy
GNN_report
Photo
General
Map
| 4016 Kb
3737 orfs
MAP | NC_002696
AE005673
| TIGR
| DOE
| NCBI
Integr8
TIGR
GIB
KEGG
Entrez
| PNAS
98,4136-4141
2001-05-22 | Nierman WC |
|---|
| Chlamydia muridarum |
|---|
Chlamydia
pneumoniae
AR39 | CHLAMYDIAE
Taxonomy
News
ASM Press
GNN_report
Karyn's Genomes
| 1229 Kb
1052 orfs
MAP | NC_002179
AE002161
| TIGR
Univ of Manitoba
| NIAID
R01AI43359
| NCBI
Integr8
TIGR
IBM-Annotation
KEGG
GIB
Entrez
| NAR
28,1397-1406
2000-03-15 | Fraser CM |
|---|
Chlamydia
trachomatis
D/UW-3/CX (serovar D) | CHLAMYDIAE
Taxonomy
Infections-1
Infections-2
Infections-3
Microbook
ASM Press
GNN_report
Karyn's Genomes
| 1042 Kb
896 orfs
MAP | NC_000117
AE001273
| Stanford Univ
Univ of California, Berkeley
| R01AI39258
NIAID
| NCBI
Integr8
Berkeley Univ
Stanford Univ
PEDANT
KEGG
GIB
GCat
IBM-Annotation
MBGD
TIGR
LANL
Entrez
| Science
282,754-759
1998-10-23 | Stephens RS |
|---|
| Chlamydophila abortus |
|---|
| Chlamydophila pneumoniae TW-183 |
|---|
Chlamydophila
caviae
GPIC | CHLAMYDIAE
Taxonomy
GNN_report
| 1173 Kb
1012 orfs
MAP | NC_003361
AE015925
| TIGR
| NIAID
| NCBI
Integr8
Entrez
| NAR
31, 2134-2147
2003-04-15 | Read TD |
|---|
Chlamydophila
pneumoniae
CWL029 | CHLAMYDIAE
Taxonomy
Blast comparison
GNN_report
Karyn's Genomes
| 1230 Kb
1052 orfs
MAP | NC_000922
AE001363
| Stanford Univ
Univ of California, Berkeley
| Incyte
| NCBI
Integr8u1
Berkeley Univ
KEGG
PEDANT
GIB
GCat
IBM-Annotation
TIGR
LANL
Entrez
| Nat Genet
21,385-389
1999-04-10 | Stephens RS |
|---|
Chlamydophila
pneumoniae
J138 | CHLAMYDIAE
Taxonomy
GNN_report
Karyn's Genomes
| 1228 Kb
1070 orfs
MAP | NC_002491
| Yamaguchi Univ
Kyushu Univ
| JSPS
| NCBI
Integr8
Kyushu Univ
TIGR
GIB
KEGG
Entrez
| NAR
28,2311-2314
2000-06-15 | Shirai M |
|---|
Chlorobium(Chlorochromatium)
chlorochromatii(aggregatum)
| CHLOROBI
Taxonomy
Image
|
| | Joint Genome Institute
Penn State Univ
| DOE
| Joint Genome Institute
| complete | Bryant D |
|---|
Chlorobium
tepidum
TLS | CHLOROBI
Taxonomy
GNN_report
| 2154 Kb
2288 orfs
MAP | NC_002932
AE006470
| TIGR
| DOE
| NCBI
Integr8
TIGR
Kazusa
Entrez
| PNAS
99, 9509-9514
2002-07-09 | Eisen JA |
|---|
Chromobacterium
violaceum
ATCC 12472 | BETA-PROTEOBACTERIA
Taxonomy
| 4751 Kb
4407 orfs
MAP | NC_005085
AE016825
| Brazilian Genome
| CNPq
MCT
| NCBI
Integr8
Brazilian Genome
Entrez
| PNAS
100, 11660-5
2003-09-18 | Simpson AJG |
|---|
Clavibacter(Corynebacterium)
michiganensissubsp.sepedonicus
ATCC33113 | ACTINOBACTERIDAE
Taxonomy
Conference_report
Pathogenesis
PAG-Abstract
Plant_Pathogen
| 2500 Kb
| | Sanger Institute
Colorado State Univ
Ohio State Univ
| USDA
| Sanger Institute
Entrez
| incomplete | Ishimaru CA |
|---|
Clostridium
acetobutylicum
ATCC 824D | FIRMICUTES
Taxonomy
Microbook
ATCC
GNN_report
| 4100 Kb
4927 orfs
MAP | NC_003030
AE001437
| Genome Therapeutics
| DOE
| NCBI
Integr8
GTC
GIB
KEGG
TIGR
ClostriDB
Entrez
| J.Bacteriol.
183,4823-4838
2001-08-10 | Smith DR |
|---|
Clostridium
acetobutylicum
ATCC 824D | FIRMICUTES
Taxonomy
Microbook
ATCC
GNN_report
| 4100 Kb
4927 orfs
MAP | NC_003030
AE001437
| Genome Therapeutics
| DOE
| NCBI
Integr8
GTC
GIB
KEGG
TIGR
ClostriDB
Entrez
| J.Bacteriol.
183,4823-4838
2001-08-10 | Smith DR |
|---|
Clostridium
botulinum
HallstrainA | FIRMICUTES
Taxonomy
ATCC 3502
| 4000 Kb
| | Sanger Institute
Univ of Reading
Institute of Food Research
| Beowulf Genomics
| NCBI
Sanger Institute
ClostriDB
Entrez
| complete | Parkhill J |
|---|
Clostridium
difficile
630 (epidemic type X) | FIRMICUTES
Taxonomy
Antibiotics
MDS
Beowulf Genomics
| 4400 Kb
| | Sanger Institute
LSHTM
Imperial College
Eastman Dental Institute,
| Beowulf Genomics
| NCBI
Sanger Institute
ClostriDB
Entrez
|
|---|
Clostridium
perfringens
13 | FIRMICUTES
Taxonomy
GNN_report
| 3031 Kb
2660 orfs
MAP | NC_003366
| Univ of Tsukuba
Kyushu Univ
Kitasato Univ
| JSPS
| NCBI
Integr8
Kyushu Univ
GIB
KEGG
TIGR
ClostriDB
Entrez
| PNAS
99, 996-1001
2002-01-22 | Shimizu T |
|---|
Clostridium
tetani
Massachusetts E88 | FIRMICUTES
Taxonomy
Antibiotics
GNN_report
| 2799 Kb
2640 orfs
MAP | NC_004557
AE015927
| Goettingen Genomics Laboratory
| German Ministry for Science and Culture
| NCBI
Integr8
Goettingen Genomics Laboratory
TIGR
ClostriDB
Entrez
| PNAS
100, 1316-21
2003-02-05 | Gottschalk G |
|---|
Clostridium
thermocellum
ATCC27405 | FIRMICUTES
Taxonomy
Entrez
| 4500 Kb
| | Joint Genome Institute
Univ of Rochester
| DOE
| NCBI
Joint Genome Institute
ClostriDB
| incomplete | Richardson P |
|---|
Corynebacterium
diphtheriae gravis
NCTC13129 | ACTINOBACTERIDAE
Taxonomy
WHO
Pathogenesis
Diphtheria
Corynebacterium
| 2488 Kb
2320 orfs
MAP | NC_002935
BX248353
| Sanger Institute
PHLS
| Beowulf Genomics
| NCBI
Integr8
Sanger Institute
Entrez
| NAR
31, 6516-6523
2003-11-15 | Parkhill J |
|---|
Corynebacterium
efficiens
YS-314T | ACTINOBACTERIDAE
Taxonomy
GNN_report
| 3137 Kb
3031 orfs
MAP | NC_004369
| NITE
Ajinomoto Co., Inc
| NITE
| NCBI
Integr8
NITE
Entrez
| Genome Res
13, 1572-9
2003-07-01 | Gojobori T |
|---|
Corynebacterium
glutamicum
Kalinowski (ATCC13032) | ACTINOBACTERIDAE
Taxonomy
Corynebacterium
ATCC 13032
PATENT
| 3282 Kb
3002 orfs
| BX927147
| Univ Bielefeld
Degussa
| BMBF
| NCBI
Integr8
| J Biotechnol
104, 5-25
2003-09-04 | Kalinowski J |
|---|
Coxiella
burnetii
RSA 493 | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
| 2100 Kb
2095 orfs
MAP | NC_002971
AE016828
| TIGR
| NIAID
DARPA
| NCBI
Integr8
Entrez
| PNAS
100, 5455-60
2003-04-29 | Heidelberg JF |
|---|
| Danio rerio (zebrafish) |
|---|
Dechloromonas
aromatica
RCB | BETA-PROTEOBACTERIA
Taxonomy
Isolation
Nature
SIU
Entrez
| 2000 Kb
| | Joint Genome Institute
Southern Illinois Univ
| DOE
| NCBI
Joint Genome Institute
| complete | Richardson P |
|---|
Dehalococcoides
ethenogenes
195 | CHLOROFLEXI
Taxonomy
News
| 1500 Kb
1591 orfs
MAP | NC_002936
| TIGR
| DOE
| NCBI
Entrez
| Science
307, 105-8
2005-01-07 | Seshadri R |
|---|
| Deinococcus radiodurans R1 |
|---|
Deinococcus
geothermalis
DSM11300 | DEINOCOCCUS-THERMUS
Taxonomy
Isolation
| 3000 Kb
| | Joint Genome Institute
Uniformed Services Univ of the Health Sciences
| DOE
| Joint Genome Institute
| incomplete | Richardson P |
|---|
Desulfotalea
psychrophila
LSv54 | DELTA-PROTEOBACTERIA
Taxonomy
Psychrophiles
GNN_News
| 3659 Kb
3228 orfs
MAP | NC_006138
CR522870
| Epidauros Biotechnologie AG
REGX
| BMBF
| NCBI
Integr8
REGX
Entrez
| Environ. Microbiol.
6, 887-902
2004-08-16 | Amann R |
|---|
Desulfovibrio
desulfuricans
G20 | DELTA-PROTEOBACTERIA
Taxonomy
Entrez
| 3900 Kb
| | Joint Genome Institute
Univ of Missouri
| DOE
| NCBI
Joint Genome Institute
| complete | Richardson P |
|---|
Desulfovibrio
vulgaris subsp. vulgaris
Hildenborough | DELTA-PROTEOBACTERIA
Taxonomy
GNN_report
| 3773 Kb
3507 orfs
MAP | NC_002937
AE017285
| TIGR
| DOE
| NCBI
Integr8
TIGR
Entrez
| Nat. Biotechnol.
22, 554-9
2004-04-11 | Heidelberg JF |
|---|
Desulfuromonas
acetoxidans
| DELTA-PROTEOBACTERIA
Taxonomy
Isolation
Entrez
| 4100 Kb
| | Joint Genome Institute
Univ of Massachusetts, Amherst
| DOE
| Joint Genome Institute
| incomplete | Richardson P |
|---|
Desulfuromonas
acetoxidans
| DELTA-PROTEOBACTERIA
Taxonomy
Isolation
Entrez
| 4100 Kb
| | Joint Genome Institute
Univ of Massachusetts, Amherst
| DOE
| Joint Genome Institute
| incomplete | Richardson P |
|---|
| Drosophila melanogaster (Fruit fly) |
|---|
Ehrlichia
canis
Jake | ALPHA-PROTEOBACTERIA
Taxonomy
Entrez
| 1000 Kb
| | Joint Genome Institute
Univ of Texas
| DOE
| NCBI
Joint Genome Institute
| complete | Richardson P |
|---|
Encephalitozoon
cuniculi
| FUNGI
Taxonomy
GNN_report
Fungi at NCBI
| 2500 Kb
1997 orfs
| NC_003229-42
| Genoscope
Univ Blaise Pascal
| CNRS
| NCBI_1
NCBI_2
Integr8
Genoscope
| Nature
414, 450-453
2001-11-22 | Vivares C |
|---|
Enterococcus
faecalis
V583 | FIRMICUTES
Taxonomy
Antibiotics
Information
News
ASM Pages
Prostatitis
Enterococcus Res. Site
GNN_report
| 3209 Kb
3337 orfs
MAP | NC_004668
AE016830
| TIGR
| NIAID
| NCBI
Integr8
TIGR
Entrez
| Science
299, 2071-4
2003-03-28 | Paulsen IT |
|---|
Erwinia
carotovora subsp. atroseptica
SCRI1043 (ATCC BAA-672) | GAMMA-PROTEOBACTERIA
Taxonomy
Paper
PAG-Abstract
Plant_Pathogen
Article
Karyn's Genomes
| 5064 Kb
4449 orfs
MAP | NC_004547
| Sanger Institute
Scottish Crop Research Institute
Univ of Cambridge
| The Scottish Office
| NCBI
Integr8
Sanger Institute
Scottish Crop Research Institute
Entrez
| PNAS
101, 11105-10
2004-07-09 | Parkhill J |
|---|
| Escherichia coli O157:H7 EDL933 |
|---|
Escherichia
coli O157:H7.
Sakai | GAMMA-PROTEOBACTERIA
Taxonomy
E.coli info
GNN_report
| 5594 Kb
5448 orfs
MAP | NC_002695
| Japanese Consortium
| JSPS
| NCBI
Integr8
Genome Information Research Center
GIB
KEGG
TIGR
Entrez
| DNA Research
8, 11-22
2001-02-27 | Hayashi T |
|---|
Escherichia
coli
K12- MG1655 | GAMMA-PROTEOBACTERIA
Taxonomy
E.coli info
Microbook
ECDC
E.coli Genome
EcoCyc
Stocks
GNN_report
Karyn's Genomes
| 4639 Kb
4289 orfs
MAP | NC_000913
U00096
| Univ of Wisconsin
| NHGRI
| NCBI
Integr8
KEGG
Transporters
Univ of Wisconsin
SWISS
EcoCyc
PEDANT
Colibri
INDIGO
GCat
IBM-Annotation
MBGD
Univ of Birmingham
EcoGene
GIB
TIGR
GenProtEC
Entrez
| Science
277,1453-1474
1997-09-05 | Blattner FR |
|---|
Escherichia
coli
UPEC-CFT073 (O6:K2:H1) | GAMMA-PROTEOBACTERIA
Taxonomy
E.coli info
GenBank
Microbook
GNN_report
| 5231 Kb
5533 orfs
MAP | NC_004431
AE014075
| Univ of Wisconsin
| NIAID
| NCBI
Integr8
Univ of Wisconsin
TIGR
Entrez
| PNAS
99, 17020-4
2002-12-09 | Blattner FR |
|---|
Escherichia
coli
EAEC-042 | GAMMA-PROTEOBACTERIA
Taxonomy
E.coli info
Enteroaggregative Ecoli
Microbook
|
| | Sanger Institute
John Radcliffe Hospital
Univ of Birmingham
Institut Pasteur
Imperial College
Queen's Univ of Belfast
| Beowulf Genomics
| NCBI
Sanger Institute
| complete | Parkhill J |
|---|
Escherichia
coli
EAEC-042 | GAMMA-PROTEOBACTERIA
Taxonomy
E.coli info
Enteroaggregative Ecoli
Microbook
|
| | Sanger Institute
John Radcliffe Hospital
Univ of Birmingham
Institut Pasteur
Imperial College
Queen's Univ of Belfast
| Beowulf Genomics
| NCBI
Sanger Institute
| complete | Parkhill J |
|---|
Escherichia
coli
EPEC-E2348/69 | GAMMA-PROTEOBACTERIA
Taxonomy
E.coli info
GenBank
Microbook
|
| | Sanger Institute
Univ of Oxford
Univ of Birmingham
Institut Pasteur
Imperial College
Queen's Univ of Belfast
| Beowulf Genomics
| NCBI
Sanger Institute
| incomplete | Parkhill J |
|---|
Exiguobacterium
sp.
255-15 | FIRMICUTES
Taxonomy
Entrez
| 3000 Kb
| | Joint Genome Institute
Michigan State Univ
| DOE
| NCBI
Joint Genome Institute
MSU
| incomplete | Richardson P |
|---|
Ferroplasma
acidarmanus
fer1 | EURYARCHAEA
Taxonomy
Image
Iron-Eating Microbe
DOE-report
ArchaeaWeb
Entrez
| 2000 Kb
| | Joint Genome Institute
| DOE
| NCBI
Joint Genome Institute
| incomplete | Richardson P |
|---|
Ferroplasma
sp.typeII
environmentalsample | EURYARCHAEA
Taxonomy
ArchaeaWeb
Reference
|
| | Joint Genome Institute
| DOE
| NCBI
| incomplete | Richardson P |
|---|
Fibrobacter
succinogenes
S85 | FIBROBACTER
Taxonomy
| 3600 Kb
| | TIGR
NACRB
| USDA
| NCBI
| incomplete | Nelson KE |
|---|
Flavobacteria
sp.
MED217 | BACTEROIDETES
Taxonomy
Information
| 5000 Kb
| | Kalmar Univ
J Craig Venter Institute
| Moore Foundation
| |
|---|
Francisella
tularensis
SCHU S4 | GAMMA-PROTEOBACTERIA
Taxonomy
Ft website
Microbook
MDS
Tularemia
| 1892 Kb
1804 orfs
MAP | NC_006570
AJ749949
| Uppsala Univ
WRAIR
MDS
| WRAIR
UK-MOD
FOI
DARPA
| NCBI
Uppsala Univ
GIB
Entrez
Integr8
| Nature Genetics
37, 153-9
2004-12-14 | Titball RW |
|---|
Frankia
sp
CcI3 | ACTINOBACTERIDAE
Taxonomy
| 5400 Kb
| | Univ of Connecticut
LBNL
Univ of New Hampshire
Joint Genome Institute
| NSF
| | incomplete | Benson DR |
|---|
Fusobacterium
nucleatum
ATCC 25586 | FUSOBACTERIA
Taxonomy
GNN_report
ATCC
| 2170 Kb
2067 orfs
MAP | NC_003454
AE009951
| Integrated Genomics Inc
| NIGMS
| NCBI
Integr8
ERGO
KEGG
TIGR
Entrez
| J Bacteriol
184, 2005-2018
2002-04-10 | Kapatral V |
|---|
| Gallus gallus (Chicken) |
|---|
Geobacillus (Bacillus)
kaustophilus
HTA426 | FIRMICUTES
Taxonomy
Entrez
| 3544 Kb
3498 orfs
MAP | NC_006510
BA000043
| JAMSTEC
| | NCBI
Integr8
| Nucleic Acids Res
32, 6292-303
2004-12-08 | Takami H |
|---|
| Geobacter metallireducens |
|---|
Geobacter
sulfurreducens
PCA | DELTA-PROTEOBACTERIA
Taxonomy
Mars
Abstract
| 3814 Kb
3467 orfs
MAP | NC_002939
AE017180
| TIGR
Univ of Massachusetts
Amherst & Exxon Corporation
| DOE
| NCBI
Integr8
Lovley Lab
Geobacter.org
Entrez
| Science
302, 1967-1969
2003-12-14 | Methe BA |
|---|
| Gibberella zeae PH-1 |
|---|
Gloeobacter
violaceus
PCC 7421 | CYANOBACTERIA
Taxonomy
| 4659 Kb
4430 orfs
MAP | NC_005125
| Kazusa DNA Research Institute
| KDRI
| NCBI
Integr8
Kazusa
Entrez
| DNA Res
10, 137-145
2003-10-06 | Tabata S |
|---|
Gluconobacter
oxydans
621H | ALPHA-PROTEOBACTERIA
Taxonomy
Entrez
| 2702 Kb
2664 orfs
MAP | NC_006677
CP000009
| Competence Network
Julich GmbH
Georg-August-Univ Goettingen
Technische Univ, Berlin
| BMBF
BASF
| NCBI
Goettingen Genomics Laboratory
| Nat. Biotechnology
23, 195-200
2005-01-24 | Sahm H |
|---|
Gluconobacter
oxydans
621H | ALPHA-PROTEOBACTERIA
Taxonomy
Entrez
| 2702 Kb
2664 orfs
MAP | NC_006677
CP000009
| Competence Network
Julich GmbH
Georg-August-Univ Goettingen
Technische Univ, Berlin
| BMBF
BASF
| NCBI
Goettingen Genomics Laboratory
| Nat. Biotechnology
23, 195-200
2005-01-24 | Sahm H |
|---|
Guillardia
theta
| CRYPTOMONAS
3 Chromosomes
Taxonomy
GNN_report
| 551 Kb
464 orfs
| AF165818
AJ010592
AF083031
| Canadian Institute of Advanced Research
Philipps-Univ Marburg
Univ of British Columbia
| NSERC
DFG
NERC
| NCBI
Integr8
IMB
| Nature
410, 1091-1096
2001-04-26 | Cavalier-Smith T |
|---|
| Haemophilus influenzae Rd KW20 |
|---|
Haemophilus
ducreyi
35000HP | GAMMA-PROTEOBACTERIA
Taxonomy
Chancroid
Disease
GNN_report
| 1698 Kb
2037 orfs
MAP | NC_002940
AE017143
| The Institute for Systems Biology
CRI, Ohio State Univ
| NIAID
| NCBI
Integr8
Microbial-pathogenesis
Entrez
| Unpublished
2003-07-23 | Munson RS |
|---|
Haemophilus
influenzae
R2846 | GAMMA-PROTEOBACTERIA
Taxonomy
MLST
| 1800 Kb
| | Univ of Washington
SBRI
| | NCBI
Univ of Washington
| incomplete | Smith A |
|---|
Haemophilus
influenzae
R2846 | GAMMA-PROTEOBACTERIA
Taxonomy
MLST
| 1800 Kb
| | Univ of Washington
SBRI
| | NCBI
Univ of Washington
| incomplete | Smith A |
|---|
Haemophilus
influenzae
R2866 | GAMMA-PROTEOBACTERIA
Taxonomy
MLST
| 1890 Kb
| | Univ of Washington
SBRI
| | NCBI
Univ of Washington
| incomplete | Smith A |
|---|
Haemophilus
influenzaeserotypeB
10810 | GAMMA-PROTEOBACTERIA
Taxonomy
| 2100 Kb
| | Sanger Institute
Univ of Oxford
| Wellcome Trust
| Sanger Institute
| incomplete | Parkhill J |
|---|
Haemophilus
parainfluenzae
T3T1 | GAMMA-PROTEOBACTERIA
Taxonomy
| 2000 Kb
| | Sanger Institute
Univ of Oxford
| Wellcome Trust
| Sanger Institute
| incomplete | Parkhill J |
|---|
Haemophilus
somnus
129PT | GAMMA-PROTEOBACTERIA
Taxonomy
Entrez
| 2500 Kb
| | Joint Genome Institute
Virginia Tech
| DOE
| NCBI
Joint Genome Institute
| complete | Inzana T |
|---|
Haemophilus
influenzaeserotypeB
10810 | GAMMA-PROTEOBACTERIA
Taxonomy
| 2100 Kb
| | Sanger Institute
Univ of Oxford
| Wellcome Trust
| Sanger Institute
| incomplete | Parkhill J |
|---|
Haemophilus
parainfluenzae
T3T1 | GAMMA-PROTEOBACTERIA
Taxonomy
| 2000 Kb
| | Sanger Institute
Univ of Oxford
| Wellcome Trust
| Sanger Institute
| incomplete | Parkhill J |
|---|
Haemophilus
somnus
129PT | GAMMA-PROTEOBACTERIA
Taxonomy
Entrez
| 2500 Kb
| | Joint Genome Institute
Virginia Tech
| DOE
| NCBI
Joint Genome Institute
| complete | Inzana T |
|---|
Haemophilus
somnus
2336 | GAMMA-PROTEOBACTERIA
Taxonomy
Entrez
| 2500 Kb
| | OUHSC
Virginia Polytechnic Institute
| USDA/CSREES
| NCBI
Ohio State Univ
| incomplete | Dyer D |
|---|
Haloarcula
marismortui
ATCC43049 | EURYARCHAEA
Taxonomy
ArchaeaWeb
Reference
Isolation
| 3419 Kb
3407 orfs
MAP | NC_006396
NC_006397
| Institute for Systems Biology
| NSF
DOE
| NCBI
Integr8
Institute for Systems Biology
Entrez
| Genome Res
14, 2221-2234
2004-11-04 | Baliga NS |
|---|
Halobacterium
sp.
NRC-1 | EURYARCHAEA
Taxonomy
GNN_report
Information
ArchaeaWeb
Karyn's Genomes
| 2014 Kb
2058 orfs
MAP | NC_002607
| Univ of Washington- Seattle
Univ of Massachusetts
| NSF
| NCBI
Integr8
Univ of Massachusetts
Univ of Washington
GIB
TIGR
IBM-Annotation
KEGG
Entrez
| PNAS
97, 12176-12181
2000-10-24 | DasSarma S |
|---|
Helicobacter
hepaticus
ATCC51449 | EPSILON-PROTEOBACTERIA
Taxonomy
GNN_report
| 1799 Kb
1875 orfs
MAP | NC_004917
AE017125
| MWG-Biotech
Univ of Wuerzburg
MIT
GeneData
| PathoGenoMik
NIH
| NCBI
Integr8
Entrez
| PNAS
100, 7901-7906
2003-06-24 | Suerbaum S |
|---|
Helicobacter
pylori
26695 | EPSILON-PROTEOBACTERIA
Taxonomy
GNN_report
Hp Foundation
Alive
Microbook
ulcers
Karyn's Genomes
| 1667 Kb
1590 orfs
MAP | NC_000915
AE000511
| TIGR
| NIH
| NCBI
Integr8
TIGR
KEGG
SWISS
PEDANT
GCat
IBM-Annotation
MBGD
GIB
PyloriGeneTM
Entrez
| Nature
388,539-547
1997-08-07 | Tomb JF |
|---|
Helicobacter
pylori
J99 | EPSILON-PROTEOBACTERIA
Taxonomy
GNN_report
ulcers
Hp Foundation
Alive
Microbook
Karyn's Genomes
| 1643 Kb
1495 orfs
MAP | NC_000921
AE001439
| Genome Therapeutics
Astra
| Genome Therapeutics
Astra
| NCBI
Integr8
Astra
KEGG
PEDANT
GCat
IBM-Annotation
GIB
PyloriGeneTM
TIGR
Entrez
| Nature
397,176-180
1999-01-14 | Alm RA |
|---|
Homo
sapiens
| PRIMATES
Taxonomy
GNN_report
Diseases
Human Genome Program
|
| 24 Chromosomes
| International Collaboration
| Wellcome Trust
| NCBI
Integr8
ORNL
RIKEN
Ensembl
Sanger Institute
HOWDY
IBM-Annotation
KEGG
TIGR
| Nature
409,860-921
2001-02-15 | Lander ES |
|---|
Idiomarina
loihiensis
L2TR (ATCC BAA-735T; DSM 15497T) | GAMMA-PROTEOBACTERIA
Taxonomy
Isolation
| 2839 Kb
2640 orfs
MAP | NC_006512
AE017340
| Univ of Hawaii
| NSF
| NCBI
Univ of Hawaii
Entrez
Integr8
| PNAS
101, 18036-18041
2004-12-02 | Maqsudul A |
|---|
Kineococcus
radiotolerans
SRS30216 | ACTINOBACTERIDAE
Taxonomy
Entrez
| 4400 Kb
| | Joint Genome Institute
Savannah River Site
| DOE
| NCBI
Joint Genome Institute
| incomplete | Fliermans C |
|---|
Lactobacillus
gasseri
ATCC33323 | FIRMICUTES
Taxonomy
Entrez
| 1800 Kb
| | Joint Genome Institute
North Carolina State Univ
| DOE
| NCBI
Joint Genome Institute
| incomplete | Klaenhammer T |
|---|
Lactobacillus
johnsonii
NCC533 | FIRMICUTES
Taxonomy
| 1992 Kb
1809 orfs
MAP | NC_005362
AE017198
| Nestle
North Carolina State Univ
Univ of Georgia
| Nestle
| NCBI
Integr8
Entrez
| PNAS
101, 2512-7
2004-02-11 | Pridmore RD |
|---|
Lactobacillus
plantarum
WCFS1 | FIRMICUTES
Taxonomy
GNN_report
| 3308 Kb
3052 orfs
MAP | NC_004567
AL935263
| Wageningen Centre for Food Sciences
Greenomics
| WCFS
| NCBI
Integr8
Univ of Nijmegen
Greenomics
TIGR
Entrez
| PNAS
100, 1990-5
2003-02-14 | Kleerebezem M |
|---|
Lactococcus
lactis subsp. lactis
IL1403 | FIRMICUTES
Taxonomy
GNN_report
Genoscope
| 2365 Kb
2266 orfs
MAP | NC_002662
AE005176
| Genoscope
INRA
| INRA
| NCBI
Integr8
INRA
IBM-Annotation
GIB
KEGG
TIGR
Entrez
| Genome Research
11, 731-753
2001-05-10 | Sorokin A |
|---|
Leptospira
interrogans serovar Copenhageni
Fiocruz L1-130 | SPIROCHAETES
Taxonomy
Leptospirosis1
Leptospirosis2
Leptospira
| 4627 Kb
3649 orfs
MAP | NC_005823
AE016823
AE016824
| Univ of Sao Paulo
Univ of Campinas
| FAPESP
CNPq
| NCBI
Integr8
Univ of Campinas
Entrez
| J. Bacteriol
186, 2164-2172
2004-04-01 | Nascimento, ALTO |
|---|
Leptospira
interrogans serovar lai
56601 | SPIROCHAETES
Taxonomy
Leptospirosis1
Leptospirosis2
Leptospira
GNN_report
| 4691 Kb
4728 orfs
MAP | NC_004342
NC_004343
AE010300
AE010301
| Chinese National Human Genome Center at Shanghai
| CNCBD
| NCBI_1
NCBI_2
Integr8
LeptoList
CHGC
TIGR
Entrez
| Nature
422, 888-93
2003-04-24 | Zhao G-P |
|---|
Leuconostoc
mesenteroides
ATCC8293 | FIRMICUTES
Taxonomy
Entrez
| 2000 Kb
| | Joint Genome Institute
North Carolina State Univ
| DOE
| NCBI
Joint Genome Institute
| incomplete | Breidt F |
|---|
| Listeria innocua Clip11262 |
|---|
Listeria
ivanovii
PAM55 | FIRMICUTES
Taxonomy
About-Listeria
Pathogenesis
| 3000 Kb
| | Institut Pasteur
Univ of Wuerzburg
Univ de Leon
AGOWA
| | Institut Pasteur
| complete | Glaser P |
|---|
Listeria
monocytogenes
F6854 (serotype 1/2a, frankfurter isolate) | FIRMICUTES
Taxonomy
GNN_report
About-Listeria
Listeriosis
Biology
Food
FDA
Pathogenesis
Publication
| 2953 Kb
2973 orfs | | TIGR
| USDA
| NCBI
| incomplete | Nelson KE |
|---|
Listeria
ivanovii
PAM55 | FIRMICUTES
Taxonomy
About-Listeria
Pathogenesis
| 3000 Kb
| | Institut Pasteur
Univ of Wuerzburg
Univ de Leon
AGOWA
| | Institut Pasteur
| complete | Glaser P |
|---|
Listeria
monocytogenes
F6854 (serotype 1/2a, frankfurter isolate) | FIRMICUTES
Taxonomy
GNN_report
About-Listeria
Listeriosis
Biology
Food
FDA
Pathogenesis
Publication
| 2953 Kb
2973 orfs | | TIGR
| USDA
| NCBI
| incomplete | Nelson KE |
|---|
Listeria
monocytogenes
H7858 (serotype 4b, meat isolate) | FIRMICUTES
Taxonomy
GNN_report
About-Listeria
Listeriosis
Biology
Food
FDA
Pathogenesis
Publication
| 2893 Kb
3024 orfs | | TIGR
| USDA
| NCBI
| incomplete | Nelson KE |
|---|
Listeria
monocytogenes
EGD-e | FIRMICUTES
Taxonomy
Listeriosis
Biology
Food
FDA
GNN_report
| 2944 Kb
2855 orfs
MAP | NC_003210
AL591824
| EC Concortium
| European Union
| NCBI
Integr8
Institut Pasteur
GIB
KEGG
TIGR
ListiList
Entrez
| Science
294,849-852
2001-10-26 | Cossart P |
|---|
Listeria
monocytogenes
F2365 (serotype 4b, cheese isolate) | FIRMICUTES
Taxonomy
GNN_report
About-Listeria
Listeriosis
Biology
Food
FDA
Pathogenesis
| 2905 Kb
2847 orfs
MAP | NC_002973
AE017262
| TIGR
| USDA
| NCBI
Integr8
Entrez
| NAR
32, 2386-95
2004-04-28 | Nelson KE |
|---|
Listeria
monocytogenes
F2365 (serotype 4b, cheese isolate) | FIRMICUTES
Taxonomy
GNN_report
About-Listeria
Listeriosis
Biology
Food
FDA
Pathogenesis
| 2905 Kb
2847 orfs
MAP | NC_002973
AE017262
| TIGR
| USDA
| NCBI
Integr8
Entrez
| NAR
32, 2386-95
2004-04-28 | Nelson KE |
|---|
Loktanella
vestfoldensis
SKA53 | ALPHA-PROTEOBACTERIA
Taxonomy
Isolation
Information
| 5000 Kb
| | Univ of Kalmar
J Craig Venter Institute
| Moore Foundation
| | incomplete | Hagstrom A |
|---|
Lyngbya
aestuarii
CCY9616 (= PCC8106) | CYANOBACTERIA
Taxonomy
Information
| 10000 Kb
| | Netherlands Institute of Ecology
J Craig Venter Institute
| Moore Foundation
| | incomplete | Stal LJ |
|---|
Magnetococcus
sp.
MC-1 | ALPHA-PROTEOBACTERIA
Taxonomy
Entrez
| 4500 Kb
| | Joint Genome Institute
Univ of Southern California
| DOE
| NCBI
Joint Genome Institute
| incomplete | Richardson P |
|---|
| Magnaporthe grisea 70-15 |
|---|
| Mannheimia succiniciproducens MBEL55E |
|---|
Mannheimia(Pasteurella)
haemolytica
PHL213(ST1) | GAMMA-PROTEOBACTERIA
Taxonomy
| 2700 Kb
| | BCM-HGSC
| USDA
NRICGP
| BCM-HGSC
| incomplete | Weinstock G |
|---|
Marinobacter
aquaeolei
| GAMMA-PROTEOBACTERIA
Taxonomy
Background
|
| | Joint Genome Institute
Woods Hole Oceanographic Institute
| DOE
| | incomplete | Edwards K |
|---|
Marinobacter
sp
F02 | GAMMA-PROTEOBACTERIA
Taxonomy
Information
| 2600 Kb
| | Woods Hole Oceanographic Institution
J Craig Venter Institute
| Moore Foundation
| | incomplete | Edwards KJ |
|---|
Marinomonas
sp.
MED121 | GAMMA-PROTEOBACTERIA
Taxonomy
Information
| 5000 Kb
| | Kalmar Univ
J Craig Venter Institute
| Moore Foundation
| | incomplete | Pinhassi J |
|---|
Mesorhizobium
sp.
BNC1 | ALPHA-PROTEOBACTERIA
Taxonomy
Entrez
| 5000 Kb
| | Joint Genome Institute
PNNL
| DOE
| NCBI
Joint Genome Institute
| incomplete | Richardson P |
|---|
Mesoplasma
florum
L1 | FIRMICUTES
Taxonomy
Karyn's Genomes
| 793 Kb
683 orfs
MAP | NC_006055
AE017263
| Broad Institute
| | NCBI
Integr8
Broad Institute
Entrez
| Unpublished
2004-07-19 | Broad Institute |
|---|
Mesorhizobium
loti
MAFF303099 | ALPHA-PROTEOBACTERIA
Taxonomy
GNN_report
| 7596 Kb
6752 orfs
MAP | NC_002678
NC_002679
NC_002682
| Kazusa DNA Research Institute
| KDRI
| NCBI
Kazusa
GIB
Integr8
KEGG
TIGR
Entrez
| DNA Research
7, 331-338
2000-12-10 | Tabata S |
|---|
| Methanocaldococcus jannaschii DSM 2661 |
|---|
Methanococcoides
burtonii
DSM6242 | EURYARCHAEA
Taxonomy
ArchaeaWeb
GNN_report
Psychrophiles
Entrez
| 3000 Kb
| | Joint Genome Institute
UMBI
| DOE
| NCBI
Joint Genome Institute
| incomplete | Richardson P |
|---|
Methanococcus
maripaludis
S2 | EURYARCHAEA
Taxonomy
ATCC
DOE-report
ArchaeaWeb
GNN_report
Karyn's Genomes
| 1661 Kb
1721 orfs
MAP | NC_005791
| Univ of Washington- Seattle
| NIGMS
| NCBI
Integr8
Univ of Washington
Entrez
| J Bact
186, 6956-6969
2004-03-11 | Leigh J |
|---|
Methanopyrus
kandleri
AV19 | EURYARCHAEA
Taxonomy
ArchaeaWeb
Karyn's Genomes
| 1694 Kb
1691 orfs
MAP | NC_003551
| Fidelity Systems, Inc
| DOE
NIH
| NCBI
Integr8
TIGR
Entrez
| PNAS
99, 4644-4649
2002-04-02 | Slesarev AI |
|---|
Methanosarcina
acetivorans
C2A | EURYARCHAEA
Taxonomy
GNN_report
ArchaeaWeb
Karyn's Genomes
| 5751 Kb
4540 orfs
MAP | NC_003552
| Broad Institute
Univ of Illinois at Urbana-Champaign
| | NCBI
Integr8
Broad Institute
TIGR
Entrez
| Genome Res.
12, 532-542
2002-04-10 | Galagan JE |
|---|
Methanosarcina
mazei
Go1 (DSMZ 3647) | EURYARCHAEA
Taxonomy
ATCC
ArchaeaWeb
GNN_report
Karyn's Genomes
| 4096 Kb
3371 orfs
MAP | NC_003901
| Goettingen Genomics Laboratory
Integrated Genomics Inc
| Ministry of Lower Saxony
MWK
| NCBI
Integr8
Goettingen Genomics Laboratory
TIGR
Entrez
| J. Mol. Micro. Biotechnol.
4, 453-461
2002-07-10 | Gottschalk G |
|---|
Methanothermobacter
thermoautotrophicus
Delta H | EURYARCHAEA
Taxonomy
GNN_report
ArchaeaWeb
Karyn's Genomes
| 1751 Kb
1918 orfs
MAP | NC_000916
| Genome Therapeutics
Ohio State Univ
| DOE
| NCBI
Integr8
GTC
Univ of Oklahoma
KEGG
PEDANT
folds
GCat
IBM-Annotation
GIB
TIGR
Entrez
| J.Bacteriology
179,7135-7155
1997-11-10 | Smith DR |
|---|
Methylobacillus
flagellatus
KT | BETA-PROTEOBACTERIA
Taxonomy
| 2884 Kb
2608 orfs | | Integrated Genomics Inc
| Integrated Genomics Inc
| | incomplete | contact |
|---|
Moorella(Clostridium)
thermoacetica
ATCC39073 | FIRMICUTES
Taxonomy
Entrez
| 2600 Kb
| | Joint Genome Institute
Univ of Nebraska
| DOE
| NCBI
Joint Genome Institute
| incomplete | Ragsdale S |
|---|
Mus
musculus
| MAMMALS
Taxonomy
GNN_report
|
30000 orfs
| | International Collaboration
| NIH
| NCBI
Integr8
Ensembl
ORNL
BCM-HGSC
IBM-Annotation
NISC
Washington Univ
TIGR
| Nature
420, 520-62
2002-12-05 | Waterston R |
|---|
| Mycobacterium leprae TN |
|---|
Mycobacterium
avium,subsp.:paratuberculosis
K-10 | ACTINOBACTERIDAE
Taxonomy
MYCDB
PAG-Abstract
Johne's disease
| 4829 Kb
4317 orfs
MAP | NC_002944
AE016958
| Univ of Minnesota
| USDA
Univ of Minnesota Agriculural Experiment Station
| NCBI
Integr8
Univ of Minnesota
Entrez
| Unpublished
2004-01-30 | Kapur V |
|---|
Mycobacterium
bovis
AF2122/97(spoligotype 9) | ACTINOBACTERIDAE
Taxonomy
Tuberculosis
MYCDB
GNN_report
| 4345 Kb
3955 orfs
MAP | NC_002945
BX248333
| Sanger Institute
Institut Pasteur
| Beowulf Genomics
MAFF
Wellcome Trust
| NCBI
Integr8
Sanger Institute
Pasteur
Entrez
| PNAS
100, 7877-7882
2003-06-24 | Gordon SV |
|---|
Mycobacterium
marinum
M | ACTINOBACTERIDAE
Taxonomy
| 6000 Kb
| | Sanger Institute
Univ of Washington
Institut Pasteur
Monash Univ
Univ of Tennessee
| Beowulf Genomics
| NCBI
Sanger Institute
| complete | Parkhill J |
|---|
Mycobacterium
smegmatis
MC2155 | ACTINOBACTERIDAE
Taxonomy
| 7000 Kb
| | TIGR
| NIAID
| NCBI
| incomplete | Fleischmann RD |
|---|
Mycobacterium
tuberculosis
CDC1551 | ACTINOBACTERIDAE
Taxonomy
Infos
Tuberculosis
GNN_report
| 4403 Kb
4187 orfs
MAP | NC_002755
AE000516
| TIGR
| NIH
| NCBI
Integr8
TIGR
GIB
KEGG
Entrez
| J Bacteriol
184, 5479-90
2001-10-02 | Fleischmann RD |
|---|
Mycobacterium
tuberculosis
H37Rv (lab strain) | ACTINOBACTERIDAE
Taxonomy
GNN_report
MycDB
Disease-1
Microbook
Tuberculosis
MYCDB
Karyn's Genomes
| 4411 Kb
4402 orfs
MAP | NC_000962
| Sanger Institute
| Wellcome Trust
| NCBI
Integr8
Sanger Institute
TIGR
PEDANT
KEGG
TubercuList
GCat
IBM-Annotation
MBGD
GIB
Entrez
| Nature
393,537-544
1998-06-11 | Cole ST |
|---|
Mycoplasma
genitalium
G-37 | FIRMICUTES
Taxonomy
GNN_report
Karyn's Genomes
| 580 Kb
468 orfs
MAP | NC_000908
| TIGR
| DOE
HGS
NIH
| NCBI
Integr8
TIGR
Genequiz
KEGG
PEDANT
folds
GIB
GCat
IBM-Annotation
MBGD
LANL
Entrez
| Science
270,397-403
1995-10-20 | Fraser CM |
|---|
Mycoplasma
hyopneumoniae
232 | FIRMICUTES
Taxonomy
M. experience
Karyn's Genomes
Entrez
| 892 Kb
691 orfs
MAP | NC_006360
AE017332
| Iowa State Univ
Univ of Washington
| ARC
Bioproperties Pty. Ltd
| NCBI
Integr8
Iowa State Univ
Univ of Alabama
| J Bacteriology
186, 7123-33
2004-08-30 | Minion C |
|---|
Mycoplasma
mobile
163K | FIRMICUTES
Taxonomy
| 777 Kb
628 orfs
MAP | NC_006908
| Broad Institute
| Broad Institute
| NCBI
Integr8
Broad Institute
Entrez
| Genome Res
14, 1447-61
2004-05-18 | Webmaster |
|---|
Mycoplasma
mycoides,subsp.mycoides SC
PG1T | FIRMICUTES
Taxonomy
M. experience
Infos
| 1211 Kb
979 orfs
MAP | NC_005364
| Royal Institute of Technology, Stockholm
National Veterinary Inst, Uppsala
Bielefeld Univ
| SSF
| NCBI
Integr8
Royal Institute of Technology, Stockholm
GenDB
Entrez
| Genome Res
14, 221-227
2004-02-03 | Uhlen M |
|---|
Mycoplasma
penetrans
HF-2 | FIRMICUTES
Taxonomy
GNN_report
| 1358 Kb
1038 orfs
MAP | NC_004432
| NIID
Kitasato Univ
| JSPS
| NCBI
Integr8
NIH-NET
TIGR
Entrez
| NAR
30, 5293-5300
2002-12-01 | Sasaki Y |
|---|
Mycoplasma
pneumoniae
M129 (ATCC29342) | FIRMICUTES
Taxonomy
Microbook
GNN_report
Karyn's Genomes
| 816 Kb
677 orfs
MAP | NC_000912
| Univ of Heidelberg
| DFG
| NCBI
Integr8
ZMBH
KEGG
PEDANT
GCat
IBM-Annotation
MBGD
GIB
TIGR
Entrez
| NAR
24,4420-4449
1996-11-15 | Herrmann R |
|---|
Mycoplasma
pulmonis
UAB CTIP | FIRMICUTES
Taxonomy
GNN_report
M. experience
Hygiene
| 963 Kb
782 orfs
MAP | NC_002771
| Genoscope
| Institut Pasteur
Genoscope
INRA
| NCBI
Integr8
Genoscope
MypuList
Univ of Rennes
Univ of Alabama
GIB
KEGG
TIGR
Entrez
| NAR
29, 2145-2153
2001-05-15 | Blanchard A |
|---|
Nanoarchaeum
equitans
Kin4-M | NANOARCHAEOTA
Taxonomy
Thermophilic
Information
ArchaeaWeb
GNN_report
Karyn's Genomes
| 500 Kb
536 orfs
MAP | NC_005213
| Diversa
Celera
| Diversa
| NCBI
Integr8
Entrez
| PNAS
100, 12984-8
2003-10-28 | Noordewier M |
|---|
| Neisseria meningitidis ser. C (str. FAM18) |
|---|
Neisseria
meningitidis
MC58 (serogroup B) | BETA-PROTEOBACTERIA
Taxonomy
GNN_report
Microbook
MRF
National Meningitis Trust
MLST
Karyn's Genomes
| 2272 Kb
2158 orfs
MAP | NC_003112
| TIGR
| Chiron Corp.
| NCBI
Integr8
TIGR
IBM-Annotation
KEGG
GIB
Entrez
| Science
287,1809-1815
2000-03-10 | Tettelin HS |
|---|
Neisseria
meningitidis
Z2491 (serogroup A) | BETA-PROTEOBACTERIA
Taxonomy
Microbook
MRF
National Meningitis Trust
MLST
GNN_report
Karyn's Genomes
| 2184 Kb
2121 orfs
MAP | NC_003116
| Sanger Institute
Univ of Oxford
Max-Planck-Berlin
| Wellcome Trust
| NCBI
Integr8
Sanger Institute
KEGG
GIB
TIGR
IBM-Annotation
Entrez
| Nature
404,502-506
2000-03-30 | Parkhill J |
|---|
Neurospora
crassa
OR74A | FUNGI
Taxonomy
7 Chromosomes
GNN_report
Fungi at NCBI
| 43000 Kb
10082 orfs
| AABX01000000
| Broad Institute
OGI School of Science & Engineering
Univ of Kentucky
Univ of Kansas
| NSF
| NCBI
Broad Institute
TIGR
| Nature
422, 859-68
2003-04-23 | Birren B |
|---|
Nitrosomonas
europaea
IFO (ATCC 19718) | BETA-PROTEOBACTERIA
Taxonomy
Description
Information1
Information2
Image
GNN_report
| 2812 Kb
2573 orfs
MAP | NC_004757
| Joint Genome Institute
| DOE
| NCBI
Integr8
Joint Genome Institute
ORNL
Entrez
| J. Bacteriol.
185, 2759-2773
2003-04-30 | Chain P |
|---|
Nocardia
farcinica
IFM 10152 | ACTINOBACTERIDAE
Taxonomy
Karyn's Genomes
Entrez
| 6292 Kb
5933 orfs
MAP | NC_006361
AP006618
| NIID
Kitasato Univ
Chiba Univ
| JSPS
| NCBI
Integr8
NIID
| PNAS
101, 14925-30
2004-10-04 | Ishikawa J |
|---|
| Nostoc punctiforme |
|---|
| Nostoc sp. PCC 7120 |
|---|
Oceanobacillus
iheyensis
HTE831 | FIRMICUTES
Taxonomy
GNN_report
| 3630 Kb
3496 orfs
MAP | NC_004193
| JAMSTEC
| | NCBI
Integr8
ExtremoBase
TIGR
Entrez
| NAR
30, 3927-3935
2002-09-07 | Takami H |
|---|
Oenococcus(Leuconostoc)
oeni
MCWPSU-1 | FIRMICUTES
Taxonomy
Entrez
| 1800 Kb
| | Joint Genome Institute
Univ of California, Davis
| DOE
| NCBI
Joint Genome Institute
| incomplete | Mills D |
|---|
Oryza
sativa ssp. japonica
| PLANTS
Taxonomy
GNN_report
| 420000 Kb
50000 orfs
| | Syngenta AG
Myriad Genetics
| | NCBI
TMRI
Sputnik
| Science
296, 92-100
2002-04-05 | Goff SA |
|---|
| Pan troglodytes (Chimpanzee) |
|---|
| Parachlamydia sp. UWE25 |
|---|
Pasteurella
multocida
Pm70 | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
Antibiotics
Pasteurellosis
| 2250 Kb
2014 orfs
MAP | NC_002663
| Univ of Minnesota
| USDA/NRI
MAES
| NCBI
Integr8
Univ of Minnesota
GIB
KEGG
TIGR
Entrez
| PNAS
98, 3460-3465
2001-03-13 | Kapur V |
|---|
Photobacterium
profundum
SS9 | GAMMA-PROTEOBACTERIA
Taxonomy
Psychrophiles
Piezophiles
Info
Photobacterium
Isolation
Karyn's Genomes
| 6403 Kb
5324 orfs
MAP | NC_006370
NC_006371
| Padova Univ
| | NCBI
Integr8
CRIBI
Entrez
| Unpublished
2004-10-19 | Vale G |
|---|
| Photorhabdus asymbiotica |
|---|
Photorhabdus
luminescens laumondii
TT01 | GAMMA-PROTEOBACTERIA
Taxonomy
Press1
Press2
| 5688 Kb
4839 orfs
MAP | NC_005126
| Institut Pasteur
| Institut Pasteur
INRA
CNRS
| NCBI
Integr8
PhotoList
Institut Pasteur
Entrez
| Nature Biotech
21, 1307-1313
2003-10-05 | Kunst F |
|---|
Phytoplasma
asteris
OY-M | FIRMICUTES
Taxonomy
| 860 Kb
754 orfs
MAP | NC_005303
| Univ of Tokyo
| | NCBI
Integr8
Entrez
| Nature Genetics
36, 27-9
2003-12-16 | Namba, S |
|---|
Picrophilus
torridus
DSM 9790 | EURYARCHAEA
Taxonomy
ArchaeaWeb
GNN_News
| 1545 Kb
1534 orfs
MAP | NC_005877
| GenoMik Competence Network
Goettingen Genomics Laboratory
TU Hamburg-Harburg
Georg-August-Univ Goettingen
| BMBF
| NCBI
Integr8
Goettingen Genomics Laboratory
Entrez
| PNAS
101, 9091-6
2004-06-07 | Liebl W |
|---|
Picrophilus
torridus
DSM 9790 | EURYARCHAEA
Taxonomy
ArchaeaWeb
GNN_News
| 1545 Kb
1534 orfs
MAP | NC_005877
| GenoMik Competence Network
Goettingen Genomics Laboratory
TU Hamburg-Harburg
Georg-August-Univ Goettingen
| BMBF
| NCBI
Integr8
Goettingen Genomics Laboratory
Entrez
| PNAS
101, 9091-6
2004-06-07 | Liebl W |
|---|
| Pirellula sp. 1 |
|---|
Plasmodium
falciparum
3D7 | PROTOZOA
14 Chromosomes
Taxonomy
GNN_report
| 22900 Kb
5268 orfs
| NC_004314-31
| Malaria Genome Project Consortium
| Wellcome Trust
Burroughs Wellcome Fund
NIAID
Naval Medical Research Center
MRMC
| NCBI
Integr8
PlasmoDB
Sanger Institute
TIGR
Stanford
Integr8
IBM-Annotation
Washington Univ
| Nature
419, 498-511
2002-10-03 | Gardner MJ |
|---|
Polaromonas
sp.
JS666 | BETA-PROTEOBACTERIA
Taxonomy
Entrez
| 5900 Kb
| | Joint Genome Institute
Cornell Univ
| DOE
| NCBI
Joint Genome Institute
| incomplete | Richardson P |
|---|
Porphyromonas
gingivalis
W83 | BACTEROIDETES
Taxonomy
Disease-1
Disease-2
GNN_report
| 2343 Kb
2227 orfs
MAP | NC_002950
| TIGR
Forsyth Dental Center
| NIDR
| NCBI
Integr8
FDC
LANL
TIGR
Entrez
| J. Bacteriol
185, 5591-5601
2003-09-09 | Nelson KE |
|---|
| Prochlorococcus marinus MED4 |
|---|
Prochlorococcus
marinus subsp. pastoris
CCMP1986 (MED4) | CYANOBACTERIA
Taxonomy
Chisholm Lab
Cyanosite
GNN_report
| 1657 Kb
1700 orfs
MAP | NC_005072
| Joint Genome Institute
| DOE
| NCBI
Integr8
Joint Genome Institute
ORNL
Kazusa
Entrez
| Nature
424, 1042-7
2003-08-13 | Chisholm SW |
|---|
Prochlorococcus
marinus
CCMP1375 (SS120) | CYANOBACTERIA
Taxonomy
GNN_report
| 1751 Kb
1884 orfs
MAP | NC_005042
| Genoscope
| Europian Union
| NCBI
Integr8
Station Biologique de Roscoff
Genoscope
Kazusa
Entrez
| PNAS
100, 10020-5
2003-08-13 | Partensky F |
|---|
Prochlorococcus
marinus
MIT9313 | CYANOBACTERIA
Taxonomy
GNN_report
| 2400 Kb
2400 orfs
MAP | NC_005071
| Joint Genome Institute
| DOE
| NCBI
Integr8
Joint Genome Institute
Kazusa
Entrez
| Nature
424, 1042-7
2003-08-13 | Chisholm SW |
|---|
Propionibacterium
acnes
KPA171202 | ACTINOBACTERIDAE
Taxonomy
Biology
Karyn's Genomes
Entrez
| 2560 Kb
2294 orfs
MAP | NC_006085
AE017283
| Goettingen Genomics Laboratory
Univ of Ulm
| BMBF
| NCBI
Integr8
Entrez
| Science
305, 671-673
2004-07-30 | Gottschalk, G |
|---|
| Pseudomonas aeruginosa UCBPP-PA14 |
|---|
Pseudomonas
aeruginosa
PAO1 | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
Antibiotics
Pseudomonas
Microbook
ASM Press
Karyn's Genomes
| 6264 Kb
5570 orfs
MAP | NC_002516
| Chiron
Univ of Washington- Seattle
| Cystic Fibrosis Foundation
| NCBI
Integr8
Pseudomonas.com
PEDANT
GIB
TIGR
KEGG
Entrez
| Nature
406,959-964
2000-09-30 | Olson MV |
|---|
Pseudomonas
fluorescens
Pf-5 | GAMMA-PROTEOBACTERIA
Taxonomy
| 6500 Kb
| | Oregon State Univ
TIGR
| USDA
| NCBI
NGRP
| incomplete | Paulsen I |
|---|
Pseudomonas
fluorescens
SBW25 | GAMMA-PROTEOBACTERIA
Taxonomy
Pseudomonas
ASM Press
Encyclopaedia
| 6600 Kb
| | Sanger Institute
Univ of Oxford
Univ of Birmingham
| BBSRC
| NCBI
Sanger Institute
| incomplete | Parkhill J |
|---|
Pseudomonas
fluorescens
Pf0-1 | GAMMA-PROTEOBACTERIA
Taxonomy
Image
Entrez
| 6400 Kb
| | Joint Genome Institute
Tufts Univ
| DOE
| NCBI
Joint Genome Institute
| incomplete | Janecki T |
|---|
Pseudomonas
putida
KT2440 | GAMMA-PROTEOBACTERIA
Taxonomy
Pseudomonas
ASM Press
GNN_report
| 6100 Kb
5420 orfs
MAP | NC_002947
| German Consortium
TIGR
| DOE
BMBF
| NCBI
Integr8
TIGR
Entrez
| Env Microbiology
4, 799-808
2002-12-03 | Nelson KE |
|---|
Pseudomonas
syringae pv. tomato
DC3000 | GAMMA-PROTEOBACTERIA
Taxonomy
Pseudomonas
ASM Press
PAG-Abstract
Plant_Pathogen
GNN_report
| 6397 Kb
5615 orfs
MAP | NC_004578
| Cornell Univ
Univ of Nebraska
Univ of Missouri
TIGR
Kansas State Univ
| NSF
| NCBI
Integr8
Cornell Univ
TIGR
Entrez
| PNAS
100, 10181-6
2003-09-02 | Buell R |
|---|
Pseudomonas
syringaepv.syringae
B728a | GAMMA-PROTEOBACTERIA
Taxonomy
Plant_Pathogen
Entrez
| 6100 Kb
| | Joint Genome Institute
Univ of California, Berkeley
| DOE
| NCBI
Joint Genome Institute
Cornell Univ
| complete | Richardson P |
|---|
Psychrobacter
sp.
273-4 | GAMMA-PROTEOBACTERIA
Taxonomy
Psychrophiles
Entrez
| 2500 Kb
| | Joint Genome Institute
Michigan State Univ
| DOE
| NCBI
Joint Genome Institute
| complete | Richardson P |
|---|
Pyrobaculum
aerophilum
IM2 | CRENARCHAEA
Taxonomy
ATCC
GNN_report
ArchaeaWeb
Karyn's Genomes
| 2222 Kb
2587 orfs
MAP | NC_003364
| CalTech
UCLA
| ONR
DOE
NIH
| NCBI
Integr8
GIB
KEGG
TIGR
Entrez
| PNAS
99,984-989
2002-01-22 | Miller JH |
|---|
Pyrococcus
abyssi
GE5 | EURYARCHAEA
Taxonomy
ArchaeaWeb
GNN_report
Karyn's Genomes
| 1765 Kb
1765 orfs
MAP | NC_000868
| Genoscope
IGBMC
| CNRS
INSERM
| NCBI
Integr8
LBMGE, France
Genoscope
PEDANT
KEGG
GIB
TIGR
IBM-Annotation
Entrez
| Genome Res
11, 981-93
2001-05-08 | Poch O |
|---|
Pyrococcus
furiosus
DSM 3638 | EURYARCHAEA
Taxonomy
2DE dbase
ATCC
ISME
ArchaeaWeb
GNN_report
Karyn's Genomes
| 1908 Kb
2065 orfs
MAP | NC_003413
| Univ of Utah
Univ of Maryland
| DOE
| NCBI
Integr8
KEGG
TIGR
Entrez
| Meth. Enzymol.
330:134-57
2002-02-12 | Robb FT |
|---|
Pyrococcus
horikoshii(shinkaj)
OT3 | EURYARCHAEA
Taxonomy
ArchaeaWeb
GNN_report
Karyn's Genomes
| 1738 Kb
1979 orfs
MAP | NC_000961
| Univ of Tokyo
NITE
| NITE
| NCBI
Integr8
NITE
AIST
PEDANT
KEGG
GCat
IBM-Annotation
GIB
TIGR
Entrez
| DNA Research
5,55-76
1998-04-30 | Kawarabayasi Y |
|---|
| Ralstonia solanacearum GMI1000 |
|---|
Ralstonia
eutropha
H16 | BETA-PROTEOBACTERIA
Taxonomy
| 7100 Kb
| | Humboldt Univ, Berlin
Georg-August-Univ Goettingen
Univ of Munster
| BMBF
| GenoMik Network Goettingen
Goettingen Genomics Laboratory
| incomplete | Friedrich B |
|---|
Ralstonia
eutropha
JMP134 | BETA-PROTEOBACTERIA
Taxonomy
Info
Entrez
| 7200 Kb
| | Joint Genome Institute
Univ Catolica de Chile
| DOE
| Joint Genome Institute
| incomplete | Richardson P |
|---|
Rattus
norvegicus (Rat)
BN/SsNHsdMCW | MAMMALS
Taxonomy
| 2750000 Kb
20973 orfs
| | International Consortium
| NIH
NHGRI
NHLBI
| NCBI
NCBI-genome
Integr8
BCM-HGSC
RATMAP
RGD
Max-Planck
TIGR
| Nature
428, 493-521
2004-04-01 | Gibbs RA |
|---|
Rhizobium
leguminosarumbv.viciae
3841 | ALPHA-PROTEOBACTERIA
Taxonomy
| 5800 Kb
| | Sanger Institute
Univ of York
Univ of East Anglia
| BBSRC
| NCBI
Sanger Institute
Univ of York
| complete | Parkhill J |
|---|
Rhodococcus
sp
RHA1 | ACTINOBACTERIDAE
Taxonomy
| 9700 Kb
| | Genome British Columbia
| Genome BC
Genome Canada
| Genome BC
Genome British Columbia
| Unpublished
2005-03-21 | Eltis L |
|---|
Rhodopseudomonas
palustris
CGA009 | ALPHA-PROTEOBACTERIA
Taxonomy
Image
| 5459 Kb
4836 orfs
MAP | NC_005296
| Joint Genome Institute
Institute of Mol Genetics, Prague
| DOE
| NCBI
Integr8
Joint Genome Institute
IMG
report
| Nat Biotechnol
22, 55-61
2003-12-14 | Stilwagen S |
|---|
Rhodopseudomonas
palustris
CGA009 | ALPHA-PROTEOBACTERIA
Taxonomy
Image
| 5459 Kb
4836 orfs
MAP | NC_005296
| Joint Genome Institute
Institute of Mol Genetics, Prague
| DOE
| NCBI
Integr8
Joint Genome Institute
IMG
report
| Nat Biotechnol
22, 55-61
2003-12-14 | Stilwagen S |
|---|
Rickettsia
conorii
Malish 7 | ALPHA-PROTEOBACTERIA
Taxonomy
GNN_report
| 1268 Kb
1374 orfs
MAP | NC_003103
| Genoscope
| Aventis
| NCBI
Integr8
RicBase
Genoscope
GIB
KEGG
TIGR
Entrez
| Science
293,2093-2098
2001-09-14 | Raoult D |
|---|
Rickettsia
prowazekii
Madrid E | ALPHA-PROTEOBACTERIA
Taxonomy
Disease
Microbook
GNN_report
Karyn's Genomes
| 1111 Kb
834 orfs
MAP | NC_000963
| Univ of Uppsala
| SSF
NFR
| NCBI
Integr8
PEDANT
KEGG
GCat
IBM-Annotation
MBGD
GIB
TIGR
Entrez
| Nature
396,133-140
1998-11-12 | Kurland CG |
|---|
Rickettsia
sibirica
246 | ALPHA-PROTEOBACTERIA
Taxonomy
GNN_report
| 1250 Kb
1387 orfs
| AABW01000001
| Univ of Maryland School of Medicine
CDC
Agencourt Bioscience
| NIAID
| NCBI
Agencourt Bioscience
| NAR
32, 1059-1064
2003-02-06 | Malek JA |
|---|
Rickettsia
typhi
Wilmington | ALPHA-PROTEOBACTERIA
Taxonomy
GNN_News
Entrez
| 1111 Kb
837 orfs
MAP | NC_006142
AE017197
| Univ of Texas
BCM-HGSC
| NIAID
| NCBI
Integr8
BCM-HGSC
| J Bacteriology
186, 5842-55
2004-08-20 | Weinstock , GM |
|---|
Rubrobacter
xylanophilus
DSM9941 | ACTINOBACTERIDAE
Taxonomy
Thermophilic
Entrez
| 3200 Kb
| | Joint Genome Institute
Louisiana State Univ
| DOE
| NCBI
Joint Genome Institute
| incomplete | Richardson P |
|---|
Ruminococcus
albus
8 | FIRMICUTES
Taxonomy
| 4000 Kb
| | TIGR
NACRB
| USDA
| NCBI
| incomplete | Nelson KE |
|---|
Ruminococcus
flavefaciens
FD-1 | FIRMICUTES
Taxonomy
| 4440 Kb
| | Univ of Illinois at Urbana-Champaign
| | Univ of Illinois at Urbana-Champaign
| incomplete | White BA |
|---|
Saccharophagus (Microbulbifer)
degradans
2-40 | GAMMA-PROTEOBACTERIA
Taxonomy
Entrez
| 5040 Kb
| | Joint Genome Institute
Univ of Maryland
| DOE
| NCBI
Joint Genome Institute
| complete | Richardson P |
|---|
| Saccharomyces cerevisiae |
|---|
| Salmonella bongori 12149 |
|---|
| Salmonella enterica serovar Choleraesuis SC-B67 |
|---|
Salmonella
enterica sv Typhi Ty2
| GAMMA-PROTEOBACTERIA
Taxonomy
General
Disease-1
WHO
Salmonellosis
Microbook
| 4791 Kb
4646 orfs
MAP | NC_004631
| Univ of Wisconsin
| NIAID
| NCBI
Integr8
Univ of Wisconsin
| J. Bacteriol
185, 2330-7
2003-03-21 | Blattner FR |
|---|
Salmonella
enterica sv Typhi
CT18 | GAMMA-PROTEOBACTERIA
Taxonomy
General
Disease-1
Microbook
Salmonellosis
WHO
GNN_report
| 4809 Kb
4600 orfs
MAP | NC_003198
| Sanger Institute
Imperial College
| Beowulf Genomics
| NCBI
Integr8
Sanger Institute
GIB
KEGG
TIGR
Entrez
| Nature
413,848-852
2001-10-25 | Parkhill J |
|---|
Salmonella
enterica sv Typhimurium LT2
SGSC1412 | GAMMA-PROTEOBACTERIA
Taxonomy
General
Disease-1
Microbook
Salmonellosis
GNN_report
| 4857 Kb
4597 orfs
MAP | NC_003197
| Washington Univ
| NIH
| NCBI
Integr8
Washington Univ
GIB
KEGG
TIGR
Entrez
| Nature
413,852-856
2001-10-25 | McClelland M |
|---|
Schizosaccharomyces
pombe
| FUNGI
Taxonomy
GNN_report
Forsburg lab
Fungi at NCBI
| 14000 Kb
4824 orfs
| 3 Chromosomes
| Sanger Institute
Cold Spring Harbor Laboratory
| European Union
Wellcome Trust
Cancer Research UK
| NCBI
Integr8
Sanger Institute
GeneDB
CSHL
KEGG
TIGR
| Nature
415,871-80
2002-02-21 | Rajandream MA |
|---|
Shewanella
oneidensis
MR-1 ATCC700550 | GAMMA-PROTEOBACTERIA
Taxonomy
DOE-report
Shewanella Federation
GNN_report
| 4969 Kb
4931 orfs
MAP | NC_004347
| TIGR
| DOE
| NCBI_1
NCBI_2
Integr8
TIGR
| Nature Biotechnology
20, 1118-1123
2002-10-07 | Heidelberg JF |
|---|
Shigella
dysenteriae
M131649 | GAMMA-PROTEOBACTERIA
Taxonomy
| 4771 Kb
| | Sanger Institute
Univ of Oxford
Univ of Birmingham
Institut Pasteur
Imperial College
Queen's Univ of Belfast
| Beowulf Genomics
| NCBI
Sanger Institute
| incomplete | Parkhill J |
|---|
Shigella
dysenteriae
M131649 | GAMMA-PROTEOBACTERIA
Taxonomy
| 4771 Kb
| | Sanger Institute
Univ of Oxford
Univ of Birmingham
Institut Pasteur
Imperial College
Queen's Univ of Belfast
| Beowulf Genomics
| NCBI
Sanger Institute
| incomplete | Parkhill J |
|---|
Shigella
sonnei
53G | GAMMA-PROTEOBACTERIA
Taxonomy
|
| | Sanger Institute
Univ of Oxford
Univ of Birmingham
Institut Pasteur
Imperial College
Queen's Univ of Belfast
| Beowulf Genomics
| NCBI
Sanger Institute
| incomplete | Parkhill J |
|---|
Shigella
flexneri,2a
301 | GAMMA-PROTEOBACTERIA
Taxonomy
Food
FDA
GNN_report
| 4607 Kb
4434 orfs
MAP | NC_004337
| Microbial Genome Center, Beijing
| Chinese Ministry of Public Health
| NCBI
Integr8
TIGR
Entrez
| NAR
30, 4432-4441
2002-10-16 | Jin Q |
|---|
Shigella
flexneri
serotype 2a 2457T | GAMMA-PROTEOBACTERIA
Taxonomy
Food
FDA
GNN_report
| 4599 Kb
4706 orfs
MAP | NC_004741
| Univ of Wisconsin
| NIAID
U01AI44387
| NCBI
Integr8
Univ of Wisconsin
| Infect. Immun.
71, 2775-2786
2003-04-23 | Blattner FR |
|---|
| Silicibacter sp. TM1040 |
|---|
Silicibacter
pomeroyi
DSS-3 | ALPHA-PROTEOBACTERIA
Taxonomy
Isolation
| 4109 Kb
4283 orfs
MAP | NC_003911
CP000031
| Univ of Georgia
TIGR
| NSF
| NCBI
Entrez
Integr8
| Nature
432, 910-3
2004-12-16 | Moran MA |
|---|
Sinorhizobium
meliloti
1021 | ALPHA-PROTEOBACTERIA
Taxonomy
Commercialization
Photograph
News
GNN_report
| 6690 Kb
6205 orfs
MAP | NC_003047
BA000012
| European Union
Stanford Univ
| European & Canadian Consortium
| NCBI
Integr8
INRA
Stanford Univ
IBM-Annotation
GIB
KEGG
TIGR
Entrez
| Science
293,668-672
2001-07-27 | Long SR |
|---|
Sphingomonas(Novosphingobium)
aromaticivorans
SMCCF199 | ALPHA-PROTEOBACTERIA
Taxonomy
Image
DOE-SMCC
| 3800 Kb
| | Joint Genome Institute
| DOE
| | incomplete | Janecki T |
|---|
Spiroplasma
citri
| FIRMICUTES
Taxonomy
|
| | Central Washington Univ
| USDA
NSF
| Central Washington Univ
| incomplete | Verhey S |
|---|
Spiroplasma
kunkelii
CR2-3x | FIRMICUTES
Taxonomy
Corn Stunt Disease
Discovery
| 1600 Kb
| | Univ of Oklahoma
| USDA
| NCBI
Univ of Oklahoma
USDA
Ohio State Univ
| incomplete | Roe B |
|---|
Staphylococcus
aureus subsp. aureus
MW2 | FIRMICUTES
Taxonomy
MLST
Demographic Information
| 2820 Kb
2632 orfs
MAP | NC_003923
| NITE
Juntendo Univ
| NITE
| NCBI
Integr8
NITE
TIGR
Entrez
| Lancet
359, 1819-1827
2002-05-25 | Hiramatsu K |
|---|
Staphylococcus
aureus
MRSA252 | FIRMICUTES
Taxonomy
Antibiotics
Microbook
FDA
MLST
Demographic Information
| 2902 Kb
2634 orfs
MAP | NC_002952
| Sanger Institute
Trinity College, Dublin
Univ of Bath
| Beowulf Genomics
| NCBI
Integr8
Sanger Institute
| PNAS
101, 9786-91
2004-06-22 | Parkhill J |
|---|
Staphylococcus
aureus
MSSA476 | FIRMICUTES
Taxonomy
Antibiotics
Microbook
FDA
MLST
Demographic Information
| 2820 Kb
2597 orfs
MAP | NC_002953
| Sanger Institute
Trinity College, Dublin
Univ of Bath
| Beowulf Genomics
| NCBI
Integr8
Sanger Institute
| PNAS
101, 9786-91
2004-06-22 | Parkhill J |
|---|
Staphylococcus
aureus
Mu50 (VRSA) | FIRMICUTES
Taxonomy
Antibiotics
Microbook
FDA
MLST
GNN_report
Demographic Information
| 2878 Kb
2697 orfs
MAP | NC_002758
| NITE
Juntendo Univ
Univ of Tsukuba
ONRI
Univ of Tokyo
Kyushu Univ
Kyoto Univ
Kitasato Univ
RIKEN
| NITE
JSPS
| NCBI
Integr8
Kyushu Univ
Juntendo Univ
GIB
Integr8
KEGG
TIGR
AureoList
Entrez
| The Lancet
357, 1225-1240
2001-04-21 | Hiramatsu K |
|---|
Staphylococcus
aureus
N315 (MRSA) | FIRMICUTES
Taxonomy
Antibiotics
Microbook
FDA
About N315
MLST
GNN_report
Demographic Information
| 2813 Kb
2594 orfs
MAP | NC_002745
| NITE
Juntendo Univ
Univ of Tsukuba
ONRI
Univ of Tokyo
Kyushu Univ
Kyoto Univ
Kitasato Univ
RIKEN
| NITE
| NCBI
Integr8
NITE
GIB
KEGG
TIGR
AureoList
Entrez
| The Lancet
357,1225-1240
2001-04-21 | Hiramatsu K |
|---|
Staphylococcus
epidermidis
ATCC 12228 | FIRMICUTES
Taxonomy
Antibiotics
Contamination
Information
ATCC
GNN_report
| 2499 Kb
2419 orfs
MAP | NC_004461
| Chinese National Human Genome Center at Shanghai
Shanghai Medical Univ
| NSFC
| NCBI
Integr8
SepiList
TIGR
| Mol Microbiology
49, 1577-93
2003-01-02 | Wen Y-M |
|---|
Stenotrophomonas
maltophilia
K279a | GAMMA-PROTEOBACTERIA
Taxonomy
| 6000 Kb
| | Sanger Institute
Univ of Bristol
| Wellcome Trust
| Sanger Institute
| complete | Parkhill J |
|---|
| Streptococcus pyogenes M5 |
|---|
Streptococcus
agalactiae
2603V/R | FIRMICUTES
Taxonomy
GNN_report
| 2160 Kb
MAP | NC_004116
| TIGR
| NIAID
| NCBI
Integr8
Integr8
TIGR
| PNAS
99, 12391-12396
2002-08-28 | Tettelin HS |
|---|
Streptococcus
agalactiae
NEM316 | FIRMICUTES
Taxonomy
Antibiotics
FDA
GNN_report
| 2211 Kb
2118 orfs
MAP | NC_004368
| Institut Pasteur
| MENRT
| NCBI
Integr8
SagaList
TIGR
| Mol Microbiol
45, 1499-513
2002-09-30 | Kunst F |
|---|
Streptococcus
mitis
NCTC12261 | FIRMICUTES
Taxonomy
| 2200 Kb
| | TIGR
| NIDCR
| TIGR
| incomplete | Banerjei LC |
|---|
Streptococcus
mutans
UA159 | FIRMICUTES
Taxonomy
Antibiotics
Microbook
FDA
ATCC 700610
GNN_report
| 2030 Kb
1963 orfs
MAP | NC_004350
| Univ of Oklahoma
Ohio State Univ
| NIDCR
| NCBI
Integr8
Univ of Oklahoma
Ohio State Univ
TIGR
| PNAS
99,14434-14439
2002-10-29 | Ferretti,J.J |
|---|
Streptococcus
pneumoniae
R6 | FIRMICUTES
Taxonomy
Antibiotics
Disease
Microbook
Diversity
FDA
ATCC BAA-255
GNN_report
| 2038 Kb
2043 orfs
MAP | NC_003098
| Eli Lilly
| Eli Lilly
| NCBI
Integr8
Eli Lilly
GIB
KEGG
TIGR
Entrez
StreptoPneumoList
| J Bacteriol.
183,5709-5717
2001-10-10 | Glass JI |
|---|
Streptococcus
pneumoniae
TIGR4 ATCC-BAA-334 | FIRMICUTES
Taxonomy
GNN_report
Antibiotics
Disease
Microbook
Diversity
FDA
MLST
| 2160 Kb
2094 orfs
MAP | NC_003028
| TIGR
| NIAID
MGRI
| NCBI
Integr8
TIGR
GIB
KEGG
StreptoPneumoList
Entrez
| Science
293,498-506
2001-07-20 | Fraser CM |
|---|
Streptococcus
pyogenes
M1 GAS SF370 | FIRMICUTES
Taxonomy
Antibiotics
Infection
Picture
Vaccine
General
Microbook
FDA
MLST
GNN_report
Karyn's Genomes
| 1852 Kb
1696 orfs
MAP | NC_002737
| Univ of Oklahoma
| NIAID
R01AI38406
| NCBI
Integr8
Univ of Oklahoma
GIB
Integr8
KEGG
Ohio State Univ
Entrez
| PNAS
98,4658-4663
2001-04-10 | Ferretti JJ |
|---|
Streptococcus
pyogenes
M18 MGAS8232 | FIRMICUTES
Taxonomy
MLST
GNN_report
Karyn's Genomes
| 1895 Kb
1889 orfs
MAP | NC_003485
| RML-NIAID
Univ of Minnesota
| NIH
| NCBI
Integr8
TIGR
| PNAS
99, 4668-4673
2002-04-02 | Musser JM |
|---|
Streptococcus
pyogenes
M3 (SSI-1) | FIRMICUTES
Taxonomy
GNN_report
Karyn's Genomes
| 1894 Kb
1861 orfs
MAP | NC_004606
| Japanese Consortium
| JSPS
| NCBI
Integr8
GIRC
| Genome Res
13, 1042-55
2003-06-10 | Nakagawa I |
|---|
Streptococcus
pyogenes
M3 MGAS315 | FIRMICUTES
Taxonomy
GNN_report
MLST
Karyn's Genomes
| 1900 Kb
1865 orfs
MAP | NC_004070
| RML-NIAID
Univ of Minnesota
| NIH
| NCBI
Integr8
TIGR
| PNAS
99, 10078-10083
2002-07-16 | Musser JM |
|---|
Streptococcus
pyogenes
M6 MGAS10394 | FIRMICUTES
Taxonomy
Karyn's Genomes
Entrez
| 1899 Kb
1879 orfs
MAP | NC_006086
CP000003
| RML-NIAID
| NIH
| NCBI
Integr8
| J. Infect. Dis.
190, 727-738
2004-08-03 | Musser JM |
|---|
Streptomyces
avermitilis
MA-4680 | ACTINOBACTERIDAE
Taxonomy
ATCC31267
Streptomyces
GNN_report
| 9025 Kb
7573 orfs
MAP | NC_003155
| Kitasato Univ
Univ of Tokyo
NITE
NIID
| MEXT
| NCBI
Integr8
NITE
| Nat. Biotechnol
21, 526-31
2003-04-14 | Omura S |
|---|
Streptomyces
coelicolor
A3(2) | ACTINOBACTERIDAE
Taxonomy
picture
Microbook
Streptomyces
GNN_report
| 8667 Kb
7825 orfs
MAP | NC_003888
| Sanger Institute
John Innes Centre
IGF
| Beowulf Genomics
BBSRC
| NCBI
Integr8
Sanger Institute
TIGR
| Nature
417, 141-147
2002-05-09 | Bentley SD |
|---|
Sulfolobus
solfataricus
P2 | CRENARCHAEA
Taxonomy
ATCC
GNN_report
ArchaeaWeb
Karyn's Genomes
| 2992 Kb
2977 orfs
MAP | NC_002754
| European Union
Canadian Bioinformatics Resource
| European Union
Canadian Genome Analysis and Technology
National Research Council of Canada
| NCBI
Integr8
LBMGE, France
IBM-Annotation
GIB
KEGG
TIGR
Entrez
| PNAS
98,7835-7840
2001-07-03 | Garrett RA |
|---|
Sulfolobus
solfataricus
P2 | CRENARCHAEA
Taxonomy
ATCC
GNN_report
ArchaeaWeb
Karyn's Genomes
| 2992 Kb
2977 orfs
MAP | NC_002754
| European Union
Canadian Bioinformatics Resource
| European Union
Canadian Genome Analysis and Technology
National Research Council of Canada
| NCBI
Integr8
LBMGE, France
IBM-Annotation
GIB
KEGG
TIGR
Entrez
| PNAS
98,7835-7840
2001-07-03 | Garrett RA |
|---|
Sulfolobus
tokodaii
7 | CRENARCHAEA
Taxonomy
GNN_report
ArchaeaWeb
Karyn's Genomes
| 2694 Kb
2826 orfs
MAP | NC_003106
| NITE
| NITE
| NCBI
Integr8
NITE
GIB
KEGG
TIGR
Entrez
| DNA Res.
8,123-40
2001-08-31 | Kawarabayasi Y |
|---|
Symbiobacterium
thermophilum
IAM 14863 | FIRMICUTES
Taxonomy
Thermophilic
Isolation
Entrez
| 3566 Kb
3310 orfs
MAP | NC_006177
AP006840
| Nihon Univ
Kitasato Univ
NIID
| JSPS
| NCBI
Integr8
| Nucleic Acids Res
32, 4937-44
2004-09-07 | Ueda K |
|---|
Synechococcus
elongatus
PCC7942 | CYANOBACTERIA
Taxonomy
Entrez
| 2700 Kb
| | Joint Genome Institute
Texas A&M Univ
| DOE
| NCBI
Joint Genome Institute
| complete | Richardson P |
|---|
Synechococcus
sp.
WH8102 | CYANOBACTERIA
Taxonomy
Information
Image
Cyanosite
GNN_report
Entrez
| 2434 Kb
2526 orfs
MAP | NC_005070
| Joint Genome Institute
Scripps Institute of Oceanography
| DOE
| NCBI
Integr8
Joint Genome Institute
Kazusa
| Nature
424, 1037-42
2003-08-13 | Palenik B |
|---|
Synechocystis
sp.
PCC6803 | CYANOBACTERIA
Taxonomy
Functional Reconstruction
Cyanosite
PCC
ATCC 27184
GNN_report
Karyn's Genomes
| 3573 Kb
3168 orfs
MAP | NC_000911
| Kazusa DNA Research Institute
| KDRI
| NCBI
Integr8
Kazusa
Genequiz
KEGG
PEDANT
GCat
IBM-Annotation
MBGD
GIB
TIGR
ERGO
CyanoList
Entrez
| DNA Res
3,109-136
1996-06-30 | Tabata S |
|---|
Tetraodon
nigroviridis
| FISH
Taxonomy
FishBase
| 385000 Kb
| CAAE01000000
| Genoscope
Broad Institute
| NHGRI
| Genoscope
Broad Institute
NHGRI
| Nature
431, 946-57
2004-10-21 | MIT |
|---|
| Thermoanaerobacter tengcongensis |
|---|
Thermoanaerobacter
tengcongensis
MB4T | FIRMICUTES
Taxonomy
GNN_report
Isolation
| 2689 Kb
2588 orfs
MAP | NC_003869
| Beijing Genomics Institute
The Institute of Microbiology, China
| | NCBI
Integr8
GIB
TIGR
| Genome Res.
5, 689-700
2002-05-07 | Yang H |
|---|
| Thermobifida fusca |
|---|
| Thermoplasma acidophilum DSM 1728 |
|---|
Thermoplasma
volcanium
GSS1 | EURYARCHAEA
Taxonomy
ArchaeaWeb
GNN_report
Karyn's Genomes
| 1584 Kb
1524 orfs
MAP | NC_002689
| AIST
| JST
| NCBI
Integr8
AIST
GIB
KEGG
TIGR
Entrez
| PNAS
97, 14257-14262
2000-12-19 | Suzuki M |
|---|
Thermosynechococcus
elongatus
BP-1 | CYANOBACTERIA
Taxonomy
GNN_report
| 2600 Kb
2477 orfs
MAP | NC_004113
| Kazusa DNA Research Institute
| KDRI
| NCBI
Integr8
Kazusa
TIGR
| DNA Res
9, 123-30
2002-08-19 | Kaneko, T |
|---|
Thermotoga
maritima
MSB8 | THERMOTOGAE
Taxonomy
Thermophilic
GNN_report
Karyn's Genomes
| 1860 Kb
1877 orfs
MAP | NC_000853
| TIGR
| DOE
| NCBI
Integr8
TIGR
PEDANT
KEGG
GCat
IBM-Annotation
MBGD
GIB
Entrez
| Nature
399,323-329
1999-05-27 | Fraser CM |
|---|
Thermus
thermophilus
HB27 | DEINOCOCCUS-THERMUS
Taxonomy
Thermophilic
GNN_report
| 2127 Kb
2201 orfs
MAP | NC_005835
| Goettingen Genomics Laboratory
| Ministry of Lower Saxony
| NCBI
Integr8
Goettingen Genomics Laboratory
| Nature Biotechnology
22, 547 - 553
2004-04-05 | Henne A |
|---|
Thiomicrospira
crunogena
XCL-2 | GAMMA-PROTEOBACTERIA
Taxonomy
Entrez
| 2400 Kb
| | Joint Genome Institute
Univ of South Florida
| DOE
| Joint Genome Institute
| incomplete | Richardson P |
|---|
Treponema
denticola
ATTC35405 | SPIROCHAETES
Taxonomy
Spirochaetaceae
Microbook
spirochetes
| 2843 Kb
2749 orfs
MAP | NC_002967
| TIGR
Univ of Texas
BCM-HGSC
| NIDCR
| NCBI
Integr8
BCM-HGSC
TIGR
LANL
| PNAS
101, 5646-51
2004-02-12 | Paulsen IT |
|---|
Treponema
pallidum ubsp. pallidum
Nichols | SPIROCHAETES
Taxonomy
Spirochaetaceae
General
Treponema
spirochetes
Microbionet
GNN_report
Karyn's Genomes
| 1138 Kb
1041 orfs
MAP | NC_000919
| Univ of Texas
TIGR
BCM-HGSC
| R01AI40390
NIAID
| NCBI
Integr8
TIGR
Univ of Texas
PEDANT
KEGG
LANL
GCat
IBM-Annotation
MBGD
GIB
BCM-HGSC
LANL
Entrez
| Science
281,375-388
1998-07-17 | Fraser CM |
|---|
Trichodesmium
erythraeum
IMS101 | CYANOBACTERIA
Taxonomy
Image
Cyanosite
Entrez
| 7800 Kb
| | Joint Genome Institute
Woods Hole Oceanographic Institute
| DOE
| NCBI
Joint Genome Institute
| incomplete | Richardson P |
|---|
Tropheryma
whipplei
TW08/27 | ACTINOBACTERIDAE
Taxonomy
Disease-1
Disease-2
Disease-3
Bug of the Month
GNN_report
| 925 Kb
817 orfs
MAP | NC_004551
| Sanger Institute
Stanford Univ
Univ of Birmingham
| Beowulf Genomics
| NCBI
Sanger Institute
TIGR
| Lancet
361, 637-644
2003-02-24 | Parkhill J |
|---|
Tropheryma
whipplei
Twist | ACTINOBACTERIDAE
Taxonomy
Disease-1
Disease-2
Disease-3
Bug of the Month
GNN_report
| 927 Kb
808 orfs
MAP | NC_004572
| Genoscope
CNRS
| | NCBI
Integr8
Genoscope
| Genome Res
13, 1800-1809
2003-08-01 | Raoult D |
|---|
| Trypanosoma brucei |
|---|
Ureaplasma
urealyticum (parvum) sv 3
ATCC700970 | FIRMICUTES
Taxonomy
Disease
GNN_report
Karyn's Genomes
| 751 Kb
650 orfs
MAP | NC_002162
| Univ of Alabama
Eli Lilly
Perkin-Elmer
| NIAID
R01AI28279
| NCBI
Integr8
Univ of Alabama
PEDANT
IBM-Annotation
KEGG
MBGD
GIB
TIGR
LANL
Entrez
| Nature
407, 757-762
2000-10-12 | Glass JI |
|---|
| Vibrio vulnificus CMCP6 |
|---|
Vibrio
cholerae
serotype O1, Biotype ElTor, strain N16961 | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
Disease
Book
Microbook
Food
FDA
Karyn's Genomes
| 4000 Kb
3885 orfs
MAP | NC_002505
NC_002506
| TIGR
| NIAID
R01AI40535
| NCBI
Integr8
TIGR
KEGG
MBGD
GIB
Entrez
| Nature
406,477-483
2000-08-03 | Fraser CM |
|---|
Vibrio
parahaemolyticus
RIMD 2210633 | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
| 5165 Kb
4832 orfs
| NC_004603
NC_004605
| Japanese Consortium
| JSPS
| NCBI_1
NCBI_2
Integr8
GIRC
TIGR
| Lancet
361, 743-9
2003-03-01 | Iida T |
|---|
Vibrio
sp.
MED222 | GAMMA-PROTEOBACTERIA
Taxonomy
Information
| 5000 Kb
| | Kalmar Univ
J Craig Venter Institute
| Moore Foundation
| | incomplete | Pinhassi J |
|---|
Vibrio
splendidus
12B01 | GAMMA-PROTEOBACTERIA
Taxonomy
Information
| 5000 Kb
| | MIT
J Craig Venter Institute
| Moore Foundation
| | incomplete | Polz M |
|---|
Wolbachia
pipientis
(Culex quinquefasciatus) | ALPHA-PROTEOBACTERIA
Taxonomy
Wolbachia-db
| 1500 Kb
| | Sanger Institute
Univ of Queensland
Liverpool School of Tropical Medicine
| Beowulf Genomics
| Sanger Institute
| incomplete | Parkhill J |
|---|
Vibrio
sp.
MED222 | GAMMA-PROTEOBACTERIA
Taxonomy
Information
| 5000 Kb
| | Kalmar Univ
J Craig Venter Institute
| Moore Foundation
| | incomplete | Pinhassi J |
|---|
Vibrio
splendidus
12B01 | GAMMA-PROTEOBACTERIA
Taxonomy
Information
| 5000 Kb
| | MIT
J Craig Venter Institute
| Moore Foundation
| | incomplete | Polz M |
|---|
Wolbachia
pipientis
(Culex quinquefasciatus) | ALPHA-PROTEOBACTERIA
Taxonomy
Wolbachia-db
| 1500 Kb
| | Sanger Institute
Univ of Queensland
Liverpool School of Tropical Medicine
| Beowulf Genomics
| Sanger Institute
| incomplete | Parkhill J |
|---|
Vibrio
vulnificus
YJ016 | GAMMA-PROTEOBACTERIA
Taxonomy
| 5211 Kb
5028 orfs
| NC_005139
NC_005140
| Yang-Ming Univ, Taiwan
| NHRI
| NCBI_1
NCBI_2
Integr8
NHRI
Yang-Ming Univ, Taiwan
| Genome Res
13, 2577-87
2003-10-15 | Shih-Feng Tsai |
|---|
Wigglesworthia (Glossina)
glossinidia (brevipalpis)
P-endosymbiont | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
| 697 Kb
621 orfs
MAP | NC_004344
| Yale Univ
Kitasato Univ
RIKEN
| JSPS
NIH
| NCBI
Integr8
Yale Univ
TIGR
| Nature Genetics
32,402-407
2002-10-24 | Aksoy S |
|---|
Wolbachia
sp
Drosophila melanogaster | ALPHA-PROTEOBACTERIA
Taxonomy
GenomeWeb
| 1267 Kb
1158 orfs
MAP | NC_002978
| TIGR
| NIAID
| NCBI
Integr8
| PLoS Biology
2, 327-341
2004-02-11 | Eisen JA |
|---|
Wolinella
succinogenes
DSM 1740 | EPSILON-PROTEOBACTERIA
Taxonomy
| 2110 Kb
2229 orfs
MAP | NC_005090
| Max-Plank Institut
| | NCBI
MPI
NIG
Entrez
| PNAS
100, 11690-5
2003-09-30 | Schuster SC |
|---|
Xanthomonas
axonopodis pv. citri
306 | GAMMA-PROTEOBACTERIA
Taxonomy
Information
Citrus Canker
Plant_Pathogen
GNN_report
| 5273 Kb
4386 orfs
MAP | NC_003919
| FAPESP
Univ of Sao Paulo
Univ of Campinas
| FAPESP
| NCBI
Integr8
Univ of Sao Paulo
TIGR
| Nature
417, 459-463
2002-05-23 | da Silva AC |
|---|
Xanthomonas
axonopodis pv. citri
306 | GAMMA-PROTEOBACTERIA
Taxonomy
Information
Citrus Canker
Plant_Pathogen
GNN_report
| 5273 Kb
4386 orfs
MAP | NC_003919
| FAPESP
Univ of Sao Paulo
Univ of Campinas
| FAPESP
| NCBI
Integr8
Univ of Sao Paulo
TIGR
| Nature
417, 459-463
2002-05-23 | da Silva AC |
|---|
Xanthomonas
campestris pv.campestris
ATCC 33913 | GAMMA-PROTEOBACTERIA
Taxonomy
Plant_Pathogen
GNN_report
| 5076 Kb
4182 orfs
MAP | NC_003902
| FAPESP
Univ of Sao Paulo
| FAPESP
| NCBI
Integr8
Univ of Sao Paulo
TIGR
Entrez
| Nature
417, 459-463
2002-05-23 | da Silva AC |
|---|
Xanthomonas
campestris pv.campestris
ATCC 33913 | GAMMA-PROTEOBACTERIA
Taxonomy
Plant_Pathogen
GNN_report
| 5076 Kb
4182 orfs
MAP | NC_003902
| FAPESP
Univ of Sao Paulo
| FAPESP
| NCBI
Integr8
Univ of Sao Paulo
TIGR
Entrez
| Nature
417, 459-463
2002-05-23 | da Silva AC |
|---|
Xylella
fastidiosa CVC
8.1.b clone 9.a.5.c | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
Organism
Disease
INFO
Karyn's Genomes
| 2679 Kb
2904 orfs
MAP | NC_002488
| ONSA
| FAPESP
| NCBI
Integr8
UNICAMP
ONSA
KEGG
MBGD
GIB
TIGR
Entrez
| Nature
406,151-157
2000-07-13 | Setubal JC |
|---|
Xylella
fastidiosa-grape
Temecula1 | GAMMA-PROTEOBACTERIA
Taxonomy
Plant_Pathogen
Biology
GNN_report
| 2519 Kb
2066 orfs
MAP | NC_004556
| AEG Brazilian Consortium
| FAPESP
USDA
| NCBI
Integr8
TIGR
| J. Bacteriol
185, 1018-1026
2003-02-03 | Van Sluys MA |
|---|
Xylella
fastidiosa-oleander
Ann1 | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
Plant_Pathogen
Entrez
| 2600 Kb
| | Joint Genome Institute
Univ of California, Berkeley
| DOE
| NCBI
Joint Genome Institute
| incomplete | Richardson P |
|---|
| Yersinia pestis biovar Medievalis str. 91001 |
|---|
Yersinia
pestis
CO-92 (Biovar Orientalis) | GAMMA-PROTEOBACTERIA
Taxonomy
Pathogenicity
Yp website
Beowulf Genomics
Microbook
FoodHACCP
| 4653 Kb
4012 orfs
MAP | NC_003143
| Sanger Institute
MDS
Imperial College
DSTL
| Beowulf Genomics
| NCBI
Integr8
Sanger Institute
MDS
IBM-Annotation
GIB
KEGG
TIGR
Entrez
| Nature
413,523-527
2001-10-04 | Parkhill J |
|---|
Yersinia
pestis
KIM10+ (Biovar Mediaevalis) | GAMMA-PROTEOBACTERIA
Taxonomy
GNN_report
Pathogenicity
Yp website
Beowulf Genomics
Microbook
GNN_report
FoodHACCP
| 4600 Kb
4198 orfs
MAP | NC_004088
| Univ of Wisconsin
| NIAID
| NCBI
Integr8
Univ of Wisconsin
TIGR
| J. Bacteriol
184, 4601-4611
2002-07-29 | Blattner FR |
|---|
Yersinia
pseudotuberculosis
IP32953 | GAMMA-PROTEOBACTERIA
Taxonomy
Desription
Picture
PAG-Abstract
FoodHACCP
Karyn's Genomes
Entrez
| 4840 Kb
3998 orfs
MAP | NC_006155
AE008692
| Lawrence Livermore National Lab
Institut Pasteur
| DOE
| NCBI
Integr8
LLNL
| PNAS
101, 13826-31
2004-08-30 | Lamerdin J |
|---|