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Organism Overview for Streptococcus pneumoniae Hungary19A-6 (487214.3)

Genome Streptococcus pneumoniae Hungary19A-6 (Taxonomy ID: 487214)    Domain Bacteria Taxonomy Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae; Streptococcus pneumoniae Hungary19A-6 Neighbors View closest neighbors Size 2,245,615 Number of Contigs (with PEGs) 1 Number of Subsystems 299 Number of Coding Sequences 2358 Number of RNAs 74

For each genome we offer a wide set of information to browse, compare and download. Browse Compare Download   Browse through the features of Streptococcus pneumoniae Hungary19A-6 both graphically and through a table. Both allow quick navigation and filtering for features of your interest. Each feature is linked to its own detail page. Click here to get to the Genome Browser Compare the metabolic reconstruction of this organism to that of another organism. Available comparisons are function based, sequence based or via KEGG. You can also BLAST against this organism. You can export all information about this organism (e.g. annotations, scenarios, subsystems) into a variety of formats (e.g. EMBL, Excel) for further analysis on your own system. Click here to get to the Export page.

Subsystem Information

Subsystem Statistics	Features in Subsystems
Subsystem Coverage Subsystem Category Distribution Subsystem Feature Counts not in Subsystem total (1107) non-hypothetical (639) hypothetical (468) in Subsystem total (1251) non-hypothetical (1201) hypothetical (50) Phages, Prophages, Transposable elements 7 / 1748 Cofactors, Vitamins, Prosthetic Groups, Pigments 98 / 1748 Cell Wall and Capsule 144 / 1748 Virulence, Disease and Defense 44 / 1748 Miscellaneous 50 / 1748 Phages, Prophages, Transposable elements, Plasmids 7 / 1748 Protein Metabolism 161 / 1748 Cell Division and Cell Cycle 36 / 1748 Regulation and Cell signaling 115 / 1748 Virulence 12 / 1748 Fatty Acids, Lipids, and Isoprenoids 54 / 1748 Respiration 22 / 1748 Predictions based on plant-prokaryote comparative analysis 27 / 1748 Phosphorus Metabolism 31 / 1748 Carbohydrates 316 / 1748 Potassium metabolism 16 / 1748 Membrane Transport 40 / 1748 Iron acquisition and metabolism 30 / 1748 Nucleosides and Nucleotides 77 / 1748 RNA Metabolism 65 / 1748 DNA Metabolism 142 / 1748 Stress Response 66 / 1748 Sulfur Metabolism 11 / 1748 Amino Acids and Derivatives 173 / 1748    Phages, Prophages, Transposable elements (7)  Phage family-specific subsystems (0)  Superinfection Exclusion (0)  Phages, Prophages, Transposable elements - no subcategory (0)  Phages, Prophages (7)  Phage head and packaging (7)  Bacteriophage structural proteins (0)  Phage Host Interactions (0)  Experimental (0)  Bacteriophage integration/excision/lysogeny (0)    Autotrophy (0)  Autotrophy - no subcategory (0)    Arabinose Sensor and transport module (0)  Arabinose (0)    Cofactors, Vitamins, Prosthetic Groups, Pigments (98)  Biotin (3)  Biotin biosynthesis (3)  Cofactors, Vitamins, Prosthetic Groups, Pigments - no subcategory (18)  Thiamin biosynthesis (18)  Quinone cofactors (0)  Thiamin (0)  Tetrapyrroles (2)  CPO analysis (2)  Riboflavin, FMN, FAD (17)  riboflavin to FAD (4)  Flavodoxin (1)  Riboflavin, FMN and FAD metabolism Extended (12)  Biotin Biosynthesis (0)  Fe-S clusters (0)  Pyridoxine (4)  Pyridoxin (Vitamin B6) Biosynthesis (4)  NAD and NADP (20)  NAD and NADP cofactor biosynthesis global (20)  Coenzyme B (0)  Folate and pterines (27)  Folate Biosynthesis (27)  Lipoic acid (0)  Coenzyme F420 (0)  Coenzyme M (0)  Arginine metabolism (0)  Coenzyme A (7)  Coenzyme A Biosynthesis (7)    Cell Wall and Capsule (144)  Capsular and extracellular polysacchrides (72)  Streptococcal Hyaluronic Acid Capsule (2)  CMP-N-acetylneuraminate Biosynthesis (2)  Polysaccharide deacetylases (1)  Rhamnose containing glycans (7)  Extracellular Polysaccharide Biosynthesis of Streptococci (5)  dTDP-rhamnose synthesis (4)  Phosphorylcholine incorporation in LPS (6)  Exopolysaccharide Biosynthesis (12)  Sialic Acid Metabolism (33)  Gram-Negative cell wall components (0)  D-alanine aminotransferase and Dipeptidase gene (0)  Cell Wall and Capsule - no subcategory (45)  Murein Hydrolases (3)  Peptidoglycan Biosynthesis (20)  UDP-N-acetylmuramate from Fructose-6-phosphate Biosynthesis (9)  tRNA-dependent amino acid transfers (2)  YjeE (4)  Recycling of Peptidoglycan Amino Acids (1)  Peptidoglycan biosynthesis--gjo (6)  Gram-Positive cell wall components (27)  Teichoic and lipoteichoic acids biosynthesis (12)  D-Alanyl Lipoteichoic Acid Biosynthesis (4)  Sortase (9)  Polyglycerolphosphate lipoteichoic acid biosynthesis (2)  Cell wall of Mycobacteria (0)    Virulence, Disease and Defense (44)  Adhesion (1)  Streptococcus pyogenes recombinatorial zone (1)  Toxins and superantigens (0)  Bacteriocins, ribosomally synthesized antibacterial peptides (17)  Bacteriocin-like peptides Blp (9)  Colicin V and Bacteriocin Production Cluster (8)  Resistance to antibiotics and toxic compounds (21)  Copper homeostasis (3)  Cobalt-zinc-cadmium resistance (4)  Mercuric reductase (2)  Mercury resistance operon (1)  Copper homeostasis: copper tolerance (1)  Resistance to fluoroquinolones (4)  Streptococcus pneumoniae Vancomycin Tolerance Locus (5)  Multidrug Resistance Efflux Pumps (1)  Virulence, Disease and Defense - no subcategory (5)  Streptococcus pyogenes Virulome (5)  Detection (0)  Invasion and intracellular resistance (0)    Photosynthesis (0)  Light-harvesting complexes (0)  Photosynthesis - no subcategory (0)  Electron transport and photophosphorylation (0)    Miscellaneous (50)  Conversion of succinly-CoA to propionyl-CoA (0)  Lactate racemization (0)  Miscellaneous - no subcategory (15)  EC 6.3.4.- Ligases that form carbon-nitrogen bonds (8)  Metabolite repair (7)  Plant-Prokaryote comparative genomics (35)  YebC (9)  At5g63420 (8)  At5g48545 and At3g56490 At1g31160 (4)  COG2509 (3)  At4g38090 (6)  Conserved gene cluster possibly involved in RNA metabolism (5)    Central Carbon Metabolism (0)  Central Carbon Metabolism - no subcategory (0)    Phages, Prophages, Transposable elements, Plasmids (7)  Phage family-specific subsystems (0)  Transposable elements (0)  Phages, Prophages (11)  Phage tail proteins 2 (4)  Phages, Prophages, Transposable elements, Plasmids - no subcategory (0)  Pathogenicity islands (3)  Listeria Pathogenicity Island LIPI-1 extended (3)  Plasmid related functions (0)    Transcriptional regulation (0)  Transcriptional regulation - no subcategory (0)    Protein Metabolism (161)  Protein folding (7)  GroEL GroES (2)  Protein chaperones (3)  Periplasmic disulfide interchange (1)  Peptidyl-prolyl cis-trans isomerase (1)  Selenoproteins (0)  Protein biosynthesis (126)  tRNA aminoacylation, Arg (1)  Translation initiation factors bacterial (5)  Ribosome SSU bacterial (21)  tRNA aminoacylation, Ala (1)  Ribosome activity modulation (1)  Trans-translation by stalled ribosomes (1)  tRNA aminoacylation, Trp (1)  Ribosome biogenesis bacterial (14)  Ribosome LSU bacterial (34)  Programmed frameshift (2)  Translation termination factors bacterial (9)  Universal GTPases (17)  Translation elongation factors bacterial (5)  tRNA aminoacylation, Thr (1)  Translation elongation factor G family (2)  tRNA aminoacylation, Glu and Gln (8)  tRNA aminoacylation, Ser (1)  tRNA aminoacylation, Phe (2)  Protein processing and modification (19)  Lipoprotein Biosynthesis (2)  Signal peptidase (2)  Ribosomal protein S5p acylation (2)  Peptide methionine sulfoxide reductase (9)  N-linked Glycosylation in Bacteria (4)  Protein degradation (9)  Protein degradation (3)  EC 3.4.11.- Aminopeptidases (3)  Proteolysis in bacteria, ATP-dependent (3)  Secretion (0)    Cell Division and Cell Cycle (36)   Bacterial checkpoint control (3)  Diadenylate cyclase cluster (3)  Cell Division and Cell Cycle - no subcategory (33)  Control of cell elongation - division cycle in Bacilli (8)  YgjD and YeaZ (2)  Two cell division clusters relating to chromosome partitioning (9)  Bacterial Cytoskeleton (14)    Regulation and Cell signaling (115)  Regulation and Cell signaling - no subcategory (96)  cAMP signaling in bacteria (3)  HPr catabolite repression system (4)  BOX, RUP and SPRITE repeats in Streptococcus pneumoniae (77)  Stringent Response, (p)ppGpp metabolism (4)  Cell envelope-associated LytR-CpsA-Psr transcriptional attenuators (8)  Signal transduction in Eukaryotes (1)  Plastidial (p)ppGpp-mediated response in plants (1)  Quorum sensing and biofilm formation (0)  Proteolytic pathway (0)  Regulation of virulence (0)  Programmed Cell Death and Toxin-antitoxin Systems (18)  Toxin-antitoxin replicon stabilization systems (2)  Fratricide in Streptococcus (10)  Phd-Doc, YdcE-YdcD toxin-antitoxin (programmed cell death) systems (2)  Toxin-antitoxin systems (other than RelBE and MazEF) (4)    Virulence (12)  Adhesion (1)  Toxins and superantigens (0)  Quorum sensing and biofilm formation (0)  Virulence - no subcategory (12)  Mycobacterium virulence operon involved in protein synthesis (SSU ribosomal proteins) (4)  Mycobacterium virulence operon involved in an unknown function with a Jag Protein and YidC and YidD (3)  Mycobacterium virulence operon involved in DNA transcription (2)  Mycobacterium virulence operon involved in protein synthesis (LSU ribosomal proteins) (3)  Resistance to antibiotics and toxic compounds (21)  Type III, Type IV, Type VI, ESAT secretion systems (0)  Fimbriae of the Chaperone/Usher Assembly Pathway (0)    Fatty Acids, Lipids, and Isoprenoids (54)  Phospholipids (18)  Glycerolipid and Glycerophospholipid Metabolism in Bacteria (18)  Triacylglycerols (0)  Fatty acids (15)  Fatty Acid Biosynthesis FASII (15)  Fatty Acids, Lipids, and Isoprenoids - no subcategory (0)  Isoprenoids (21)  Isoprenoinds for Quinones (5)  Isoprenoid Biosynthesis (10)  Polyprenyl Diphosphate Biosynthesis (4)  Isoprenoid Biosynthesis: Interconversions (2)    Nitrogen Metabolism (0)  Nitrogen Metabolism - no subcategory (0)    Dormancy and Sporulation (1)  Spore DNA protection (0)  Dormancy and Sporulation - no subcategory (1)  Sporulation-associated proteins with broader functions (1)    Respiration (22)  ATP synthases (16)  V-Type ATP synthase (8)  F0F1-type ATP synthase (8)  Electron accepting reactions (1)  Anaerobic respiratory reductases (1)  Plastidial (cyanobacterial) electron transport system (0)  Electron donating reactions (1)  Respiratory dehydrogenases 1 (1)  Mitochondrial electron transport system in plants (0)  Reverse electron transport (0)  Sodium Ion-Coupled Energetics (0)  Respiration - no subcategory (4)  Biogenesis of c-type cytochromes (3)  Soluble cytochromes and functionally related electron carriers (1)    Central metabolism (0)  TCA (0)  Central metabolism - no subcategory (0)    Predictions based on plant-prokaryote comparative analysis (27)  Predictions based on plant-prokaryote comparative analysis - no subcategory (27)  At3g21300 (9)  At2g25870 (2)  At2g23840 (4)  At4g10620 At3g57180 At3g47450 (12)    Metabolism of Aromatic Compounds (2)  Peripheral pathways for catabolism of aromatic compounds (2)  Quinate degradation (2)  Anaerobic degradation of aromatic compounds (0)  Metabolism of central aromatic intermediates (0)  Metabolism of Aromatic Compounds - no subcategory (0)    Metabolite damage and its repair or mitigation (0)  Metabolite damage and its repair or mitigation - no subcategory (0)    Phosphorus Metabolism (31)  Phosphorus Metabolism - no subcategory (31)  High affinity phosphate transporter and control of PHO regulon (13)  Phosphate metabolism (18)    Carbohydrates (316)  Lactose utilization (0)  Central carbohydrate metabolism (68)  Methylglyoxal Metabolism (2)  Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate (7)  Pyruvate Alanine Serine Interconversions (4)  Dihydroxyacetone kinases (9)  Glycolysis and Gluconeogenesis (14)  Entner-Doudoroff Pathway (15)  Pentose phosphate pathway (13)  Pyruvate metabolism I: anaplerotic reactions, PEP (2)  Glycolate, glyoxylate interconversions (2)  Aminosugars (19)  Chitin and N-acetylglucosamine utilization (3)  N-Acetyl-Galactosamine and Galactosamine Utilization (16)  Di- and oligosaccharides (108)  Sucrose utilization (9)  Fructooligosaccharides(FOS) and Raffinose Utilization (22)  Maltose and Maltodextrin Utilization (20)  Trehalose Uptake and Utilization (5)  Beta-Glucoside Metabolism (21)  Lactose and Galactose Uptake and Utilization (29)  Lactose utilization (2)  Glycoside hydrolases (0)  Aceton metabolism (0)  One-carbon Metabolism (23)  Formaldehyde assimilation: Ribulose monophosphate pathway (10)  Serine-glyoxylate cycle (8)  One-carbon metabolism by tetrahydropterines (5)  Organic acids (3)  Glycerate metabolism (2)  Alpha-acetolactate operon (1)  Fermentation (24)  Fermentations: Mixed acid (13)  Fermentations: Lactate (8)  Acetoin, butanediol metabolism (3)  CO2 fixation (0)  Carbohydrates - no subcategory (1)  VC0266 (1)  Sugar alcohols (18)  Glycerol and Glycerol-3-phosphate Uptake and Utilization (9)  Mannitol Utilization (9)  Polysaccharides (9)  Glycogen metabolism (8)  Alpha-Amylase locus in Streptocococcus (1)  Nucleotide sugars (0)  Monosaccharides (43)  Mannose Metabolism (11)  Deoxyribose and Deoxynucleoside Catabolism (8)  D-gluconate and ketogluconates metabolism (1)  L-ascorbate utilization (and related gene clusters) (8)  Fructose utilization (12)  D-galactarate, D-glucarate and D-glycerate catabolism - gjo (1)  D-ribose utilization (1)  D-galactarate, D-glucarate and D-glycerate catabolism (1)    Biotin Utilization (0)  Biotin Utilization - no subcategory (0)    Phenylacetic acid degradation (0)  Phenylacetic acid degradation - no subcategory (0)    Energy Metabolism (0)  Energy Metabolism - no subcategory (0)    Potassium metabolism (16)  Potassium metabolism - no subcategory (16)  Potassium homeostasis (7)  Hyperosmotic potassium uptake (2)  Glutathione-regulated potassium-efflux system and associated functions (7)    Plasmids (0)  Plasmid transfer (0)  Plasmid replication (0)    Membrane Transport (40)  Protein secretion system, Type II (0)  ABC transporters (13)  ABC transporter oligopeptide (TC 3.A.1.5.1) (8)  ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (5)  Protein translocation across cytoplasmic membrane (10)  SecY2-SecA2 Specialized Transport System (7)  EcsAB transporter affecting expression and secretion of secretory preproteins (3)  Protein secretion system, Type III (0)  Uni- Sym- and Antiporters (0)  Membrane Transport - no subcategory (17)  ECF class transporters (17)  TRAP transporters (0)  Sugar Phosphotransferase Systems, PTS (0)  Protein secretion system, Type VII (0)  Protein secretion system, Type VI (0)  Protein secretion system, Type VIII (Extracellular nucleation/precipitation pathway, ENP) (0)  Protein and nucleoprotein secretion system, Type IV (0)  Protein secretion system, Chaperone-Usher pathway (CU) (0)    Iron acquisition and metabolism (30)  Siderophores (0)  Anaerobic Heme Catabolism (0)  Iron acquisition and metabolism - no subcategory (30)  Iron acquisition in Streptococcus (11)  Heme, hemin uptake and utilization systems in GramPositives (16)  Ferrous iron transporter EfeUOB, low-pH-induced (3)    Nucleosides and Nucleotides (77)  Pyrimidines (29)  pyrimidine conversions (16)  De Novo Pyrimidine Synthesis (13)  Purines (34)  De Novo Purine Biosynthesis (15)  Xanthine Metabolism in Bacteria (2)  Purine Utilization (3)  Purine conversions (14)  Kinase (0)  Nucleosides and Nucleotides - no subcategory (7)  Ribonucleotide reduction (7)  Detoxification (7)  Nudix proteins (nucleoside triphosphate hydrolases) (4)  Housecleaning nucleoside triphosphate pyrophosphatases (3)    RNA Metabolism (65)  RNA processing and modification (48)  YrdC-YciO (3)  tRNA nucleotidyltransferase (1)  YrdC-YciO-Sua5 and associated protein families (8)  RNA processing and degradation, bacterial (4)  ATP-dependent RNA helicases, bacterial (3)  tRNA modification Archaea (10)  Queuosine-Archaeosine Biosynthesis (9)  Ribonuclease H (2)  tRNA processing (8)  Transcription (17)  Transcription initiation, bacterial sigma factors (1)  RNA polymerase bacterial (5)  Transcription factors bacterial (10)  Rrf2 family transcriptional regulators (1)  RNA Metabolism - no subcategory (0)    Motility and Chemotaxis (1)  Magnetotaxis (0)  Motility and Chemotaxis - no subcategory (1)  Bacterial Chemotaxis (1)  Flagellar motility in Prokaryota (0)  Social motility and nonflagellar swimming in bacteria (0)    Secondary Metabolism (0)  Secondary Metabolism - no subcategory (0)  Lipid-derived mediators (0)  Plant Octadecanoids (0)  Bacterial cytostatics, differentiation factors and antibiotics (0)  Plant Glucosinolates (0)  Biosynthesis of phenylpropanoids (0)  Biodegradation (0)  Hydrocarbons (0)  Aromatic amino acids and derivatives (0)  Plant Alkaloids (0)  Biologically active compounds in metazoan cell defence and differentiation (0)  Plant Hormones (0)    DNA Metabolism (142)  DNA repair (49)  Uracil-DNA glycosylase (1)  DNA repair, bacterial MutL-MutS system (3)  DNA repair, UvrABC system (3)  DNA repair, bacterial DinG and relatives (1)  2-phosphoglycolate salvage (3)  ATP-dependent Nuclease (2)  DNA repair, bacterial UmuCD system (3)  DNA repair, bacterial (16)  DNA repair, bacterial RecFOR pathway (8)  DNA repair, bacterial RecBCD pathway (1)  DNA repair, bacterial UvrD and related helicases (1)  DNA Repair Base Excision (7)  CRISPs (0)  DNA Metabolism - no subcategory (22)  Type I Restriction-Modification (10)  Restriction-Modification System (10)  YcfH (1)  DNA structural proteins, bacterial (1)  DNA replication (28)  DNA-replication (24)  DNA topoisomerases, Type II, ATP-dependent (4)  DNA recombination (2)  RuvABC plus a hypothetical (2)  DNA uptake, competence (41)  DNA processing cluster (3)  Late competence (14)  Gram Positive Competence (10)  Competence in Streptococci (14)    Stress Response (66)  General Stress Response and Stationary Phase Response (0)  Osmotic stress (14)  Osmoregulation (3)  Choline and Betaine Uptake and Betaine Biosynthesis (11)  Dessication stress (0)  Acid stress (6)  Glutamate transporter involved in acid tolerance in Streptococcus (6)  Oxidative stress (25)  Protection from Reactive Oxygen Species (1)  Oxidative stress (7)  Glutathione: Biosynthesis and gamma-glutamyl cycle (1)  Glutathione: Non-redox reactions (3)  Glutathione: Redox cycle (4)  Glutaredoxins (9)  Cold shock (0)  Heat shock (16)  Heat shock dnaK gene cluster extended (16)  Detoxification (9)  D-tyrosyl-tRNA(Tyr) deacylase (1)  Tellurite resistance: Chromosomal determinants (1)  Stress Response - no subcategory (2)  Universal stress protein family (1)  Hfl operon (1)  Periplasmic Stress (1)  Periplasmic Stress Response (1)    Plant cell walls and outer surfaces (0)  Plant cell walls and outer surfaces - no subcategory (0)    Sulfur Metabolism (11)  Inorganic sulfur assimilation (0)  Sulfur Metabolism - no subcategory (11)  Thioredoxin-disulfide reductase (3)  Galactosylceramide and Sulfatide metabolism (8)  Organic sulfur assimilation (0)    Amino Acids and Derivatives (173)  Glutamine, glutamate, aspartate, asparagine; ammonia assimilation (11)  Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (9)  Glutamate dehydrogenases (1)  Glutamine synthetases (1)  Histidine Metabolism (0)  Arginine; urea cycle, polyamines (30)  Arginine Deiminase Pathway (5)  Polyamine Metabolism (15)  Arginine and Ornithine Degradation (10)  Lysine, threonine, methionine, and cysteine (57)  Methionine Degradation (11)  Methionine Biosynthesis (27)  Threonine and Homoserine Biosynthesis (7)  Threonine degradation (1)  Cysteine Biosynthesis (2)  Lysine Biosynthesis DAP Pathway (9)  Amino Acids and Derivatives - no subcategory (0)  Branched-chain amino acids (13)  Branched-Chain Amino Acid Biosynthesis (9)  Leucine Biosynthesis (4)  5-oxoproline (0)  Polyamines (0)  Aromatic amino acids and derivatives (34)  Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate) (9)  Chorismate Synthesis (11)  Phenylalanine and Tyrosine Branches from Chorismate (4)  Tryptophan synthesis (10)  Proline and 4-hydroxyproline (12)  Proline Synthesis (4)  A Hypothetical Protein Related to Proline Metabolism (2)  Evolution of Proline Biosynthesis (for review by Fichman et al) (6)  Alanine, serine, and glycine (16)  Glycine Biosynthesis (1)  Alanine biosynthesis (5)  Serine Biosynthesis (3)  Glycine and Serine Utilization (7)    display  items per page «first  «prev displaying 1 - 1445 of 1445 next»  last» Category  Subcategory  Subsystem  Role  Features «first  «prev displaying 1 - 1445 of 1445 next»  last»