Annotation Overview for fig|158878.1.peg.2355 in Staphylococcus aureus subsp. aureus Mu50:
Teicoplanin resistance transporter, TcaB family => TcaB

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current assignment	Teicoplanin resistance transporter, TcaB family => TcaB
taxonomy id	158878	contig	NC_002758 (2,878,040bp)NC_002774 (25,107bp)
internal links	genome browser | feature evidence | sequence	ACH Annotation Clearinghouse (ACH) The Annotation Clearinghouse offers a mapping of genes which are identical in sequence except for the start region (due to differences in start calling). [?]	show essentially identical genes
PubMed links	11042376
annotation history		run tool	Psi-BlastTMpredTMHMMGram negative PSORTGram negative SignalPGram positive PSORTGram positive SignalPLipoPRadarPPSearchGram negative CELLOGram positive CELLOProDomPDBRNAFold
CDD link	show cdd
PATtyfam	PGF_00056162: Teicoplanin resistance associated membrane protein TcaB PLF_1279_00004012: Teicoplanin resistance associated membrane protein TcaB
alignments and trees	25 alignments and trees
coregulated with	183 pegs
edit functional role	Teicoplanin resistance transporter, TcaB family => TcaB
aliases	GeneID:1122380 NP_372879.1 SAV2355 gi|15925345 tcaB	propagation lock	Unlocked Toggle lock

Annotation History (history of similar genes)

Date	Annotator	Annotation
9/2/2005	annotation_repair	Annotation for existing assignment Teicoplanin resistance associated membrane protein TcaB
9/2/2005	annotation_repair	Set master function to Teicoplanin resistance associated membrane protein TcaB
10/17/2015	annotation_transfer	Migrating 2 annotations for fig|158878.1.peg.2355 from core seed (including function assignment) at 2015-10-18 01:15:21
10/17/2015	SvetaG	Migrate assignment from Teicoplanin resistance associated membrane protein TcaB to Teicoplanin resistance transporter TcaB
10/17/2015	SvetaG	Assignment projected from fig|158879.1.peg.2230 based on identical sequence
10/18/2015	SvetaG	Set master function to Teicoplanin resistance transporter TcaB
7/28/2016	annotation_transfer	Migrating 2 annotations for fig|158878.1.peg.2355 from core seed (including function assignment) at 2016-07-30 01:15:09
7/28/2016	VeronikaV	Migrate assignment from Teicoplanin resistance transporter TcaB to Teicoplanin resistance transporter, TcaB family => TcaB
7/28/2016	VeronikaV	Assignment projected from fig|158879.1.peg.2230 based on identical sequence
7/30/2016	VeronikaV	Set master function to Teicoplanin resistance transporter, TcaB family => TcaB

We have assigned the function "Teicoplanin resistance transporter, TcaB family => TcaB" to the encoded protein. The protein occurs in 1 subsystem: "Teicoplanin-resistance in Staphylococcus". In "Teicoplanin-resistance in Staphylococcus", it appears to play a functional role that we have not associated with any other gene, and it occurs in close proximity on the chromosome with another gene from the same subsystem. The function of this gene is asserted in 11042376.

The chromosomal region of the focus gene (top) is compared with four similar organisms. The graphic is centered on the focus gene, which is red and numbered 1. Sets of genes with similar sequence are grouped with the same number and color. Genes whose relative position is conserved in at least four other species are functionally coupled and share gray background boxes. The size of the region and the number of genomes may be reset. Click on any arrow in the display to refocus the comparison on that gene. The focus gene always points to the right, even if it is located on the minus strand.