Protein Page for fig|93061.5.peg.1895

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov

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Protein fig|93061.5.peg.1895: Staphylococcus aureus subsp. aureus NCTC 8325

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NCBI Taxonomy Id: 93061

Current Assignment: Phage integrase

Translate Function Assignments

Context on contig NC_007795 from base 1960810 to 1972846 (12037 bp)


Fid	Start	End	Size (nt)		Gap	Fc-sc	SS	Ev	Function	Aliases
1885	1961031	1960810	222	-					Phage phi 11 orf10 protein homolog	locus\|SAOUHSC_02077, protein_id\|YP_500570.1, gi\|88195761, geneID\|3919764
1886	1961494	1961045	450	-	13				Phage phi 11 orf9 protein homolog	locus\|SAOUHSC_02078, protein_id\|YP_500571.1, gi\|88195762, geneID\|3919765
1887	1961760	1961536	225	-	41				Phage phi 11 orf8 protein homolog	locus\|SAOUHSC_02079, protein_id\|YP_500572.1, gi\|88195763, geneID\|3919766
1888	1962552	1961761	792	-	0	6			Phage antirepressor protein	locus\|SAOUHSC_02080, protein_id\|YP_500573.1, gi\|88195764, geneID\|3919767
1889	1963017	1962709	309	-	156				Phage protein	locus\|SAOUHSC_02081, protein_id\|YP_500574.1, gi\|88195765, geneID\|3919768
1890	1963250	1963032	219	-	14				Phage transcriptional regulator cro	locus\|SAOUHSC_02083, protein_id\|YP_500575.1, gi\|88195766, geneID\|3919769
1891	1963392	1964111	720	+	141	11			Phage repressor protein cI	locus\|SAOUHSC_02084, protein_id\|YP_500576.1, gi\|88195767, geneID\|3919770
1892	1964181	1964348	168	+	69				Phage protein	locus\|SAOUHSC_02085, protein_id\|YP_500577.1, gi\|88195768, geneID\|3919771
1893	1964508	1964693	186	+	159				Phage phi 11 orf4 protein homolog	locus\|SAOUHSC_02086, protein_id\|YP_500578.1, gi\|88195769, geneID\|3919772
1894	1964729	1965634	906	+	35				Phage phi 11 orf3 protein homolog	locus\|SAOUHSC_02087, protein_id\|YP_500579.1, gi\|88195770, geneID\|3919773
1895	1965883	1966929	1047	+	248				Phage integrase	locus\|SAOUHSC_02089, protein_id\|YP_500581.1, gi\|88195772, geneID\|3919775
1896	1966974	1968119	1146	+	44		1: 1		Hypothetical protein SAV1877	locus\|SAOUHSC_02090, protein_id\|YP_500582.1, gi\|88195773, geneID\|3919776
1897	1968909	1968379	531	-	259		1: 1		Acyl-CoA hydrolase (EC 3.1.2.20)	locus\|SAOUHSC_02091, protein_id\|YP_500583.1, gi\|88195774, geneID\|3919777
1898	1970246	1968999	1248	-	89		2: 3 1		Aminopeptidase S (Leu, Val, Phe, Tyr preference) (EC 3.4.11.24)	locus\|SAOUHSC_02092, protein_id\|YP_500584.1, gi\|88195775, geneID\|3919778
1899	1970458	1970258	201	-	11		2: 2 1		Hypothetical protein YfkK	locus\|SAOUHSC_02093, protein_id\|YP_500585.1, gi\|88195776, geneID\|3921166
1900	1970605	1971069	465	+	146		1: 1	dlit(12193638)	Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) PtpA	locus\|SAOUHSC_02095, protein_id\|YP_500586.1, gi\|88195777, geneID\|3921167
1901	1971076	1971351	276	+	6		1: 1		Hypothetical protein YfkI	locus\|SAOUHSC_02096, protein_id\|YP_500587.1, gi\|88195778, geneID\|3921168
1902	1971629	1972846	1218	+	277		4: 4 2 5 1		Ribonuclease BN (EC 3.1.-.-)	locus\|SAOUHSC_02097, protein_id\|YP_500588.1, gi\|88195779, geneID\|3921169

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Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

Protein Sequence

>fig|93061.5.peg.1895 Phage integrase
MPVYKDDNTGKWYFSIRYKDVYGNNKRKMKRGFERKKDAKLAESEFIQNVKYGYSDNQPF
EYIFFDRLKNENLSARSIEKRTTEYNTHIKERFGNIPIGKITTTQCTAFRNYLLNDAGLS
VDYARSVWAGFKAVINYAKKHYKLLYDPTLSVTPIPRTKPQAKFITREEFDEKVEQITND
TSRQLTRLLFYSGLRIGEALALQWKDYDKIKGEIDVNKKINLSNRKIEYNLKKESSKGII
PVPNLIREMLKNMYNESSKRYKYFDENYFIFGGLEPIRYVTYSYHFKSVFPNLKIHHLRH
SYASYLINNGVDMYLLMELMRHSNITETIQTYSHLYTDKKHQAMSIFD

MD5 = 0583c9dbea40459cf9384e1474bfc2ae

DNA Sequence

>fig|93061.5.peg.1895 Phage integrase
atgccagtatataaggatgataatacaggtaaatggtatttttccattagatataaagat
gtatacggtaataacaaacgaaaaatgaagcgtgggtttgaacgtaagaaagatgccaaa
ctagctgaaagcgaatttatacaaaatgttaaatatggatactcggacaatcaacccttt
gaatatatattttttgatcgtttaaaaaatgaaaatctttctgcacgctcaatagaaaag
cgaactacagaatataatactcacataaaagaaaggttcggaaatatccctattggcaaa
atcactactacgcaatgtactgctttcaggaattatttgttaaacgatgcaggtctttct
gttgactatgcacgatctgtgtgggcaggttttaaagcagttatcaattacgccaaaaag
cattacaagctcttatacgaccccacattatcggtaactcctattcccagaacaaaacca
caagctaaatttatcactcgtgaagaatttgatgaaaaagtagaacaaatcacaaatgat
acttctcgtcagctaactagactgttattttattctggtcttagaataggagaagcttta
gctttgcagtggaaagattacgataaaataaaaggcgaaattgacgtaaataagaaaatc
aatttaagtaatagaaaaattgaatataatctaaaaaaagaaagctctaaagggataata
cctgtaccaaatttaattagagagatgcttaaaaacatgtataatgaatcttctaaaaga
tataaatattttgacgaaaactattttatattcgggggtttagaacctattagatacgtt
acttattcgtatcattttaaatctgtattcccgaatctaaaaatacaccatttaagacac
tcgtacgctagctatttaattaataatggtgtagatatgtatttattaatggaattaatg
aggcattctaacattacagaaacaattcaaacgtactctcatttatatactgataaaaaa
catcaagctatgagcatatttgattaa

DNA with Flanking Sequence

>fig|93061.5.peg.1895 Phage integrase
ttgaacaagtttgataaagatataattaaacaaacacctgattacaagaggaatataaga
acatttttaaacgaaatggaaaacaacgatttaatagaagaacatttaaaacattcagtc
aaagctgctattgaacacagaaactctattatgcatggtattaaaatcgaagagtacaat
tcgataattcaaacattatttgacgaaatagctaagctgtctaatgtatataagtctctt
aataaacagtaagcaaaatcggattcttcattacataccgaatattcatcataaacactg
actgcatcttctaagacattttttaaaattctaatgtcttcattcgttaaaactaattca
ttgaaattatgattgtttttaaatgtcataacatcacctactttttattttattatatca
catttagtacctagtactaaatttcgggtagcccgcctacccttattattttttgccaat
tttgaggagggagaagcaaaatgccagtatataaggatgataatacaggtaaatggtatt
tttccattagatataaagatgtatacggtaataacaaacgaaaaatgaagcgtgggtttg
aacgtaagaaagatgccaaactagctgaaagcgaatttatacaaaatgttaaatatggat
actcggacaatcaaccctttgaatatatattttttgatcgtttaaaaaatgaaaatcttt
ctgcacgctcaatagaaaagcgaactacagaatataatactcacataaaagaaaggttcg
gaaatatccctattggcaaaatcactactacgcaatgtactgctttcaggaattatttgt
taaacgatgcaggtctttctgttgactatgcacgatctgtgtgggcaggttttaaagcag
ttatcaattacgccaaaaagcattacaagctcttatacgaccccacattatcggtaactc
ctattcccagaacaaaaccacaagctaaatttatcactcgtgaagaatttgatgaaaaag
tagaacaaatcacaaatgatacttctcgtcagctaactagactgttattttattctggtc
ttagaataggagaagctttagctttgcagtggaaagattacgataaaataaaaggcgaaa
ttgacgtaaataagaaaatcaatttaagtaatagaaaaattgaatataatctaaaaaaag
aaagctctaaagggataatacctgtaccaaatttaattagagagatgcttaaaaacatgt
ataatgaatcttctaaaagatataaatattttgacgaaaactattttatattcgggggtt
tagaacctattagatacgttacttattcgtatcattttaaatctgtattcccgaatctaa
aaatacaccatttaagacactcgtacgctagctatttaattaataatggtgtagatatgt
atttattaatggaattaatgaggcattctaacattacagaaacaattcaaacgtactctc
atttatatactgataaaaaacatcaagctatgagcatatttgattaaacggtatcaaatt
ggtatcaaataacaattaaggagtttataaaatgcgtaataacaagcctaaaataagtat
tcaaaacgacccatgggaagcatataacgatgttaaagaacatggccaattaactttaag
taacatcgaatttacaactacaaatctttgtaatatgcgttgtagccactgtgcagttgg
ttatactttacaaactgtcgaccccgagcctttagatatggacttaatttatcgtagact
tgatgaaattccaaatctgcgaacgatgtctattacaggtggcgaaccaatgttttctaa
aaagtctattagaaatgttgttaaacctctattaaagtatgcacatcatcgaggtatata
tacacaaatgaattcaaacctaacattgcctcaagatcgttatttagatattgctgaata
tatcgatgttatgcatatctcacacaactggggaacaactgatgaattcgcaaatgttgg
ctttggc

Assignments for Essentially Identical Proteins


Id	Organism	Who	Assignment
GO:0003677			F:DNA binding
GO:0006310			P:DNA recombination
GO:0015074			P:DNA integration
cmr\|NT05SA1890	Staphylococcus aureus NCTC 8325		integrase
fig\|12360.1.peg.1	Staphylococcus aureus phage phi 11	FIG	Phage integrase
fig\|93061.3.peg.1973	Staphylococcus aureus subsp. aureus NCTC 8325	FIG	Phage integrase
gb\|AAA32198.1	Staphylococcus phage 11		integrase (int)
gb\|AAL82229.1	Staphylococcus aureus phage phi 11		integrase
gb\|ABD31140.1	Staphylococcus aureus subsp. aureus NCTC 8325		integrase, phage family, putative
gi\|166159	Staphylococcus phage 11	NCBI	integrase (int)
gi\|18920488	Staphylococcus aureus phage phi 11	NCBI	integrase
gi\|29028564	Staphylococcus phage 11	NCBI	integrase
gi\|87203330	Staphylococcus aureus subsp. aureus NCTC 8325	NCBI	integrase, phage family, putative
gi\|88195772	Staphylococcus aureus subsp. aureus NCTC 8325	NCBI	phage family integrase
img\|637894715	Staphylococcus aureus aureus NCTC 8325	IMG	integrase, phage family, putative
img\|638296996	Staphylococcus phage 11	IMG	integrase
kegg\|sao:SAOUHSC_02089	Staphylococcus aureus subsp. aureus NCTC 8325	KEGG	phage family integrase
ref\|NP_803254.1	Staphylococcus phage 11	RefSeq	integrase
ref\|YP_500581.1	Staphylococcus aureus subsp. aureus NCTC 8325	RefSeq	phage family integrase
tr\|Q2FX17	Staphylococcus aureus (strain NCTC 8325)	TrEMBL	Integrase, phage family, putative
tr\|Q38045	Staphylococcus phage phi11 (Bacteriophage phi-11)	TrEMBL	Integrase

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Functional Coupling


Score	Peg	Function
6	fig\|93061.5.peg.1888	Phage antirepressor protein
11	fig\|93061.5.peg.1891	Phage repressor protein cI

Attributes

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