The SEED: an Annotation/Analysis Tool Provided by FIG
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Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1885 | 1961031 | 1960810 | 222 | - | ![]() |
Phage phi 11 orf10 protein homolog | locus|SAOUHSC_02077, protein_id|YP_500570.1, gi|88195761, geneID|3919764 | |||||
1886 | 1961494 | 1961045 | 450 | - | 13 | ![]() |
Phage phi 11 orf9 protein homolog | locus|SAOUHSC_02078, protein_id|YP_500571.1, gi|88195762, geneID|3919765 | ||||
1887 | 1961760 | 1961536 | 225 | - | 41 | ![]() |
Phage phi 11 orf8 protein homolog | locus|SAOUHSC_02079, protein_id|YP_500572.1, gi|88195763, geneID|3919766 | ||||
1888 | 1962552 | 1961761 | 792 | - | 0 | ![]() |
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6 | Phage antirepressor protein | locus|SAOUHSC_02080, protein_id|YP_500573.1, gi|88195764, geneID|3919767 | ||
1889 | 1963017 | 1962709 | 309 | - | 156 | ![]() |
Phage protein | locus|SAOUHSC_02081, protein_id|YP_500574.1, gi|88195765, geneID|3919768 | ||||
1890 | 1963250 | 1963032 | 219 | - | 14 | ![]() |
Phage transcriptional regulator cro | locus|SAOUHSC_02083, protein_id|YP_500575.1, gi|88195766, geneID|3919769 | ||||
1891 | 1963392 | 1964111 | 720 | + | 141 | ![]() |
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11 | Phage repressor protein cI | locus|SAOUHSC_02084, protein_id|YP_500576.1, gi|88195767, geneID|3919770 | ||
1892 | 1964181 | 1964348 | 168 | + | 69 | ![]() |
Phage protein | locus|SAOUHSC_02085, protein_id|YP_500577.1, gi|88195768, geneID|3919771 | ||||
1893 | 1964508 | 1964693 | 186 | + | 159 | ![]() |
Phage phi 11 orf4 protein homolog | locus|SAOUHSC_02086, protein_id|YP_500578.1, gi|88195769, geneID|3919772 | ||||
1894 | 1964729 | 1965634 | 906 | + | 35 | ![]() |
Phage phi 11 orf3 protein homolog | locus|SAOUHSC_02087, protein_id|YP_500579.1, gi|88195770, geneID|3919773 | ||||
1895 | 1965883 | 1966929 | 1047 | + | 248 | ![]() |
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Phage integrase | locus|SAOUHSC_02089, protein_id|YP_500581.1, gi|88195772, geneID|3919775 | |||
1896 | 1966974 | 1968119 | 1146 | + | 44 | ![]() |
1: 1 | Hypothetical protein SAV1877 | locus|SAOUHSC_02090, protein_id|YP_500582.1, gi|88195773, geneID|3919776 | |||
1897 | 1968909 | 1968379 | 531 | - | 259 | ![]() |
1: 1 | Acyl-CoA hydrolase (EC 3.1.2.20) | locus|SAOUHSC_02091, protein_id|YP_500583.1, gi|88195774, geneID|3919777 | |||
1898 | 1970246 | 1968999 | 1248 | - | 89 | ![]() |
2: 3 1 | Aminopeptidase S (Leu, Val, Phe, Tyr preference) (EC 3.4.11.24) | locus|SAOUHSC_02092, protein_id|YP_500584.1, gi|88195775, geneID|3919778 | |||
1899 | 1970458 | 1970258 | 201 | - | 11 | ![]() |
2: 2 1 | Hypothetical protein YfkK | locus|SAOUHSC_02093, protein_id|YP_500585.1, gi|88195776, geneID|3921166 | |||
1900 | 1970605 | 1971069 | 465 | + | 146 | ![]() |
1: 1 | dlit(12193638) | Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) PtpA | locus|SAOUHSC_02095, protein_id|YP_500586.1, gi|88195777, geneID|3921167 | ||
1901 | 1971076 | 1971351 | 276 | + | 6 | ![]() |
1: 1 | Hypothetical protein YfkI | locus|SAOUHSC_02096, protein_id|YP_500587.1, gi|88195778, geneID|3921168 | |||
1902 | 1971629 | 1972846 | 1218 | + | 277 | ![]() |
4: 4 2 5 1 | Ribonuclease BN (EC 3.1.-.-) | locus|SAOUHSC_02097, protein_id|YP_500588.1, gi|88195779, geneID|3921169 |
Annotation History / View All Related Annotations | Help on Annotations |
Id | Organism | Who | ASSIGN | Assignment |
---|---|---|---|---|
GO:0003677 | F:DNA binding | |||
GO:0006310 | P:DNA recombination | |||
GO:0015074 | P:DNA integration | |||
cmr|NT05SA1890 | Staphylococcus aureus NCTC 8325 | integrase | ||
fig|12360.1.peg.1 | Staphylococcus aureus phage phi 11 | FIG | Phage integrase | |
fig|93061.3.peg.1973 | Staphylococcus aureus subsp. aureus NCTC 8325 | FIG | Phage integrase | |
gb|AAA32198.1 | Staphylococcus phage 11 | integrase (int) | ||
gb|AAL82229.1 | Staphylococcus aureus phage phi 11 | integrase | ||
gb|ABD31140.1 | Staphylococcus aureus subsp. aureus NCTC 8325 | integrase, phage family, putative | ||
gi|166159 | Staphylococcus phage 11 | NCBI | integrase (int) | |
gi|18920488 | Staphylococcus aureus phage phi 11 | NCBI | integrase | |
gi|29028564 | Staphylococcus phage 11 | NCBI | integrase | |
gi|87203330 | Staphylococcus aureus subsp. aureus NCTC 8325 | NCBI | integrase, phage family, putative | |
gi|88195772 | Staphylococcus aureus subsp. aureus NCTC 8325 | NCBI | phage family integrase | |
img|637894715 | Staphylococcus aureus aureus NCTC 8325 | IMG | integrase, phage family, putative | |
img|638296996 | Staphylococcus phage 11 | IMG | integrase | |
kegg|sao:SAOUHSC_02089 | Staphylococcus aureus subsp. aureus NCTC 8325 | KEGG | phage family integrase | |
ref|NP_803254.1 | Staphylococcus phage 11 | RefSeq | integrase | |
ref|YP_500581.1 | Staphylococcus aureus subsp. aureus NCTC 8325 | RefSeq | phage family integrase | |
tr|Q2FX17 | Staphylococcus aureus (strain NCTC 8325) | TrEMBL | Integrase, phage family, putative | |
tr|Q38045 | Staphylococcus phage phi11 (Bacteriophage phi-11) | TrEMBL | Integrase |
Score | Peg | Function |
---|---|---|
6 | fig|93061.5.peg.1888 | Phage antirepressor protein |
11 | fig|93061.5.peg.1891 | Phage repressor protein cI |
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