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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|93061.5.peg.1891: Staphylococcus aureus subsp. aureus NCTC 8325

This feature in The SEED Viewer

NCBI Taxonomy Id: 93061

Current Assignment: Phage repressor protein cI
Translate Function Assignments



Context on contig NC_007795 from base 1958083 to 1970246 (12164 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1879 1958637 1958083 555 -           Phage ssDNA binding protein locus|SAOUHSC_02071, protein_id|YP_500564.1, gi|88195755, geneID|3919758
1880 1959446 1958667 780 - 29         Phage phi 11 orf12 protein homolog locus|SAOUHSC_02072, protein_id|YP_500565.1, gi|88195756, geneID|3919759
1881 1959983 1959447 537 - 0         Phage phi 11 orf61 protein homolog locus|SAOUHSC_02073, protein_id|YP_500566.1, gi|88195757, geneID|3919760
1882 1960256 1959996 261 - 12         Phage phi 11 orf11 protein homolog locus|SAOUHSC_02074, protein_id|YP_500567.1, gi|88195758, geneID|3919761
1883 1960566 1960237 330 - -20         Phage protein locus|SAOUHSC_02075, protein_id|YP_500568.1, gi|88195759, geneID|3919762
1884 1960817 1960656 162 - 89         Phage phi 11 orf10a protein homolog locus|SAOUHSC_02076, protein_id|YP_500569.1, gi|88195760, geneID|3919763
1885 1961031 1960810 222 - -8         Phage phi 11 orf10 protein homolog locus|SAOUHSC_02077, protein_id|YP_500570.1, gi|88195761, geneID|3919764
1886 1961494 1961045 450 - 13         Phage phi 11 orf9 protein homolog locus|SAOUHSC_02078, protein_id|YP_500571.1, gi|88195762, geneID|3919765
1887 1961760 1961536 225 - 41         Phage phi 11 orf8 protein homolog locus|SAOUHSC_02079, protein_id|YP_500572.1, gi|88195763, geneID|3919766
1888 1962552 1961761 792 - 0         Phage antirepressor protein locus|SAOUHSC_02080, protein_id|YP_500573.1, gi|88195764, geneID|3919767
1889 1963017 1962709 309 - 156         Phage protein locus|SAOUHSC_02081, protein_id|YP_500574.1, gi|88195765, geneID|3919768
1890 1963250 1963032 219 - 14         Phage transcriptional regulator cro locus|SAOUHSC_02083, protein_id|YP_500575.1, gi|88195766, geneID|3919769
1891 1963392 1964111 720 + 141       Phage repressor protein cI locus|SAOUHSC_02084, protein_id|YP_500576.1, gi|88195767, geneID|3919770
1892 1964181 1964348 168 + 69         Phage protein locus|SAOUHSC_02085, protein_id|YP_500577.1, gi|88195768, geneID|3919771
1893 1964508 1964693 186 + 159         Phage phi 11 orf4 protein homolog locus|SAOUHSC_02086, protein_id|YP_500578.1, gi|88195769, geneID|3919772
1894 1964729 1965634 906 + 35         Phage phi 11 orf3 protein homolog locus|SAOUHSC_02087, protein_id|YP_500579.1, gi|88195770, geneID|3919773
1895 1965883 1966929 1047 + 248 4     Phage integrase locus|SAOUHSC_02089, protein_id|YP_500581.1, gi|88195772, geneID|3919775
1896 1966974 1968119 1146 + 44     1: 1   Hypothetical protein SAV1877 locus|SAOUHSC_02090, protein_id|YP_500582.1, gi|88195773, geneID|3919776
1897 1968909 1968379 531 - 259     1: 1   Acyl-CoA hydrolase (EC 3.1.2.20) locus|SAOUHSC_02091, protein_id|YP_500583.1, gi|88195774, geneID|3919777
1898 1970246 1968999 1248 - 89     2: 2 1   Aminopeptidase S (Leu, Val, Phe, Tyr preference) (EC 3.4.11.24) locus|SAOUHSC_02092, protein_id|YP_500584.1, gi|88195775, geneID|3919778

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|93061.5.peg.1891 Phage repressor protein cI
MDKKELAKFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHI
LNISIDDLFPTRNNKKNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDEYKESKLV
SYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIK
KEDSIKDGTIALVVLDGVSLIKRVDICEDYINLVSLNPKYDDIKVASFSNIKVMGKVVL

MD5 = 15da5d447dd5afa1ca4bd44ce3a3e41a


  DNA Sequence

>fig|93061.5.peg.1891 Phage repressor protein cI
atggataaaaaagaattagcgaaatttataggcaataaaatcagatactatagaaccaaa
ttgaacttaactcaagatcaacttggagaaaaactcaacactaaaaaagctactatttca
aattatgagacagggtacagaactcctaaacaagatgatttgtttgaaattgctcatatt
ttaaatatcagtatcgatgatttgtttcctacaagaaataataaaaaaaacgacatcact
tccatatacaacaaactcacacctccccgccaagaaaacgtacttaactacgcaaatgag
caattagatgaacagaataaagtcacttctatagatgaatataaagagtctaaactagta
tcgtatattgcatgtggtgcaactggtgctggcataggagaagaattatatgatgacata
ttgcatgaagaagtattttttaaagaagacgaaacgccatcaaatgctgatttttgtatt
ttagttaatggtgattcaatggaacctatgttaaaacaaggaacatacgcttttattaag
aaagaagattctattaaagatggtacaattgcactcgttgtattagatggagtaagtctt
atcaagcgtgtagatatatgcgaagactatattaatttggtatctctaaatccgaagtat
gatgatatcaaagtcgcttcgtttagtaatattaaagtaatgggcaaagttgtattgtga


  DNA with Flanking Sequence

>fig|93061.5.peg.1891 Phage repressor protein cI
atgtttgttgaaaagatctcgagtgtatcttatttctttaagtgatttatcataagcttc
aatttgtcctgaaaggttatgatattttagttgtagttttactaattttaatgattggtc
ttgcatttgttatgtctcctttaagatgtttgtttgcgtttcgtgtactttgtgggtaaa
aaaatatctccaatattttcgtcaaaaaaatcagcgataataaacatctcatcattctta
aattgatgctttcctaattcttttaaacgataaccttcagttgatatattcaagaggttt
gctaaatcttcttgagtacactttctttcttttctcaactttattaaattccattgcatg
ttgtcacctcccgcttacaaaacctactatacacgatacgtgtacttgagtcaacataaa
agtttgcttttcgtgtatttttttgttgaataccaaaaataattgggttatactataggt
aaatttaaggaggtaagaaaatggataaaaaagaattagcgaaatttataggcaataaaa
tcagatactatagaaccaaattgaacttaactcaagatcaacttggagaaaaactcaaca
ctaaaaaagctactatttcaaattatgagacagggtacagaactcctaaacaagatgatt
tgtttgaaattgctcatattttaaatatcagtatcgatgatttgtttcctacaagaaata
ataaaaaaaacgacatcacttccatatacaacaaactcacacctccccgccaagaaaacg
tacttaactacgcaaatgagcaattagatgaacagaataaagtcacttctatagatgaat
ataaagagtctaaactagtatcgtatattgcatgtggtgcaactggtgctggcataggag
aagaattatatgatgacatattgcatgaagaagtattttttaaagaagacgaaacgccat
caaatgctgatttttgtattttagttaatggtgattcaatggaacctatgttaaaacaag
gaacatacgcttttattaagaaagaagattctattaaagatggtacaattgcactcgttg
tattagatggagtaagtcttatcaagcgtgtagatatatgcgaagactatattaatttgg
tatctctaaatccgaagtatgatgatatcaaagtcgcttcgtttagtaatattaaagtaa
tgggcaaagttgtattgtgattaatagcgcctatatggcactttaatataaaagacgtct
atttcagcagtgtttaaaaggagtttataatgaaaataactaattgcaaaataaaaaaag
aaactatagtatatgaagttttaactagtggtaatcaaccattcacttatgagttaccta
aagatttatcgtcacataatgcgcgtaaatacttggaatttatttcacaaaaaatagatg
gcgataagttaaattaattcaaagaataaagtaacttcataaagagtacgaagaaaacga
tctaatgaccgaacttattcttgaatatttagtaaaaaagtatgttgaagaagaatatag
gaaataagctcctatacggcgctttaacataaaaagtaaaggagaaataaaaaattatgg
aatcatatgaagaaattgagcatatacacattaacactggtagaaaaaaacttacacaag
aacaaatagaagaagccaaagcttttatagacagtcaagg


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0043565       F:sequence-specific DNA binding
cmr|NT05SA1886 Staphylococcus aureus NCTC 8325     77ORF011
cmr|SACOL0321 Staphylococcus aureus subsp. aureus COL     prophage L54a, repressor protein, putative
fig|12360.1.peg.5 Staphylococcus aureus phage phi 11 FIG   Phage repressor protein cI
fig|320837.3.peg.42 Bacteriophage 42e FIG   Phage repressor protein cI
fig|93061.3.peg.1968 Staphylococcus aureus subsp. aureus NCTC 8325 FIG   Phage repressor protein cI
fig|93062.19.peg.314 Staphylococcus aureus subsp. aureus COL FIG   Phage repressor protein cI
fig|93062.4.peg.780 Staphylococcus aureus subsp. aureus COL FIG   Phage repressor protein cI
gb|AAL82233.1 Staphylococcus aureus phage phi 11     cI-like repressor
gb|AAW37528.1 Staphylococcus aureus subsp. aureus COL     prophage L54a, repressor protein, putative
gb|AAX91130.1 Bacteriophage 42e     ORF018
gb|ABD31135.1 Staphylococcus aureus subsp. aureus NCTC 8325     phage repressor protein, putative
gi|18920492 Staphylococcus aureus phage phi 11 NCBI   cI-like repressor
gi|29028568 Staphylococcus phage 11 NCBI   cI-like repressor
gi|57285434 Staphylococcus aureus subsp. aureus COL NCBI   prophage L54a, repressor protein, putative
gi|57651248 Staphylococcus aureus subsp. aureus COL NCBI   prophage L54a, repressor protein, putative
gi|62636019 Bacteriophage 42e NCBI   ORF018
gi|66395526 Staphylococcus phage 42E NCBI   ORF018
gi|87203325 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   phage repressor protein, putative
gi|88195767 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   phage repressor protein, putative
img|637151096 Staphylococcus aureus aureus COL IMG   prophage L54a, repressor protein, putative
img|637894710 Staphylococcus aureus aureus NCTC 8325 IMG   phage repressor protein, putative
img|638297000 Staphylococcus phage 11 IMG   cI-like repressor
img|638314313 Bacteriophage 42e IMG   ORF018
kegg|sac:SACOL0321 Staphylococcus aureus subsp. aureus COL KEGG   prophage L54a, repressor protein, putative
kegg|sao:SAOUHSC_02084 Staphylococcus aureus subsp. aureus NCTC 8325 KEGG   phage repressor protein, putative
ref|NP_803258.1 Staphylococcus phage 11 RefSeq   cI-like repressor
ref|YP_185213.1 Staphylococcus aureus subsp. aureus COL RefSeq   prophage L54a, repressor protein, putative
ref|YP_239894.1 Staphylococcus phage 42E RefSeq   ORF018
ref|YP_500576.1 Staphylococcus aureus subsp. aureus NCTC 8325 RefSeq   phage repressor protein, putative
tr|Q2FX22 Staphylococcus aureus (strain NCTC 8325) TrEMBL   Phage repressor protein, putative
tr|Q4ZCY2 Staphylococcus phage 42E TrEMBL   ORF018
tr|Q5HJ44 Staphylococcus aureus (strain COL) TrEMBL   Prophage L54a, repressor protein, putative
tr|Q8SDX2 Staphylococcus phage phi11 (Bacteriophage phi-11) TrEMBL   CI-like repressor


  Links to Related Entries in Other Sites

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  Functional Coupling

Score Peg Function
4 fig|93061.5.peg.1895 Phage integrase


  Attributes

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  Protein Families

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