The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki] [GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]
|
![]() |
Fid | Start | End | Size (nt) |
Gap | Find best clusters |
Pins | Fc-sc | SS | Ev | Function | Aliases | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1875 | 1956247 | 1955006 | 1242 | - | ![]() |
Phage DNA helicase (EC 3.6.4.12) | locus|SAOUHSC_02067, protein_id|YP_500560.1, gi|88195751, geneID|3919754 | |||||
1876 | 1956600 | 1956244 | 357 | - | -4 | ![]() |
Hypothetical protein, SAB1742c homolog [SA bacteriophages 11, Mu50B] | locus|SAOUHSC_02068, protein_id|YP_500561.1, gi|88195752, geneID|3919755 | ||||
1877 | 1957406 | 1956600 | 807 | - | -1 | ![]() |
Phage replication initiation protein | locus|SAOUHSC_02069, protein_id|YP_500562.1, gi|88195753, geneID|3919756 | ||||
1878 | 1958070 | 1957378 | 693 | - | -29 | ![]() |
Phage phi 11 orf14 protein homolog | locus|SAOUHSC_02070, protein_id|YP_500563.1, gi|88195754, geneID|3919757 | ||||
1879 | 1958637 | 1958083 | 555 | - | 12 | ![]() |
Phage ssDNA binding protein | locus|SAOUHSC_02071, protein_id|YP_500564.1, gi|88195755, geneID|3919758 | ||||
1880 | 1959446 | 1958667 | 780 | - | 29 | ![]() |
Phage phi 11 orf12 protein homolog | locus|SAOUHSC_02072, protein_id|YP_500565.1, gi|88195756, geneID|3919759 | ||||
1881 | 1959983 | 1959447 | 537 | - | 0 | ![]() |
Phage phi 11 orf61 protein homolog | locus|SAOUHSC_02073, protein_id|YP_500566.1, gi|88195757, geneID|3919760 | ||||
1882 | 1960256 | 1959996 | 261 | - | 12 | ![]() |
Phage phi 11 orf11 protein homolog | locus|SAOUHSC_02074, protein_id|YP_500567.1, gi|88195758, geneID|3919761 | ||||
1883 | 1960566 | 1960237 | 330 | - | -20 | ![]() |
Phage protein | locus|SAOUHSC_02075, protein_id|YP_500568.1, gi|88195759, geneID|3919762 | ||||
1884 | 1960817 | 1960656 | 162 | - | 89 | ![]() |
Phage phi 11 orf10a protein homolog | locus|SAOUHSC_02076, protein_id|YP_500569.1, gi|88195760, geneID|3919763 | ||||
1885 | 1961031 | 1960810 | 222 | - | -8 | ![]() |
Phage phi 11 orf10 protein homolog | locus|SAOUHSC_02077, protein_id|YP_500570.1, gi|88195761, geneID|3919764 | ||||
1886 | 1961494 | 1961045 | 450 | - | 13 | ![]() |
Phage phi 11 orf9 protein homolog | locus|SAOUHSC_02078, protein_id|YP_500571.1, gi|88195762, geneID|3919765 | ||||
1887 | 1961760 | 1961536 | 225 | - | 41 | ![]() |
Phage phi 11 orf8 protein homolog | locus|SAOUHSC_02079, protein_id|YP_500572.1, gi|88195763, geneID|3919766 | ||||
1888 | 1962552 | 1961761 | 792 | - | 0 | ![]() |
Phage antirepressor protein | locus|SAOUHSC_02080, protein_id|YP_500573.1, gi|88195764, geneID|3919767 | ||||
1889 | 1963017 | 1962709 | 309 | - | 156 | ![]() |
Phage protein | locus|SAOUHSC_02081, protein_id|YP_500574.1, gi|88195765, geneID|3919768 | ||||
1890 | 1963250 | 1963032 | 219 | - | 14 | ![]() |
Phage transcriptional regulator cro | locus|SAOUHSC_02083, protein_id|YP_500575.1, gi|88195766, geneID|3919769 | ||||
1891 | 1963392 | 1964111 | 720 | + | 141 | ![]() |
Phage repressor protein cI | locus|SAOUHSC_02084, protein_id|YP_500576.1, gi|88195767, geneID|3919770 | ||||
1892 | 1964181 | 1964348 | 168 | + | 69 | ![]() |
Phage protein | locus|SAOUHSC_02085, protein_id|YP_500577.1, gi|88195768, geneID|3919771 | ||||
1893 | 1964508 | 1964693 | 186 | + | 159 | ![]() |
Phage phi 11 orf4 protein homolog | locus|SAOUHSC_02086, protein_id|YP_500578.1, gi|88195769, geneID|3919772 | ||||
1894 | 1964729 | 1965634 | 906 | + | 35 | ![]() |
Phage phi 11 orf3 protein homolog | locus|SAOUHSC_02087, protein_id|YP_500579.1, gi|88195770, geneID|3919773 | ||||
1895 | 1965883 | 1966929 | 1047 | + | 248 | ![]() |
Phage integrase | locus|SAOUHSC_02089, protein_id|YP_500581.1, gi|88195772, geneID|3919775 |
Annotation History / View All Related Annotations | Help on Annotations |
Id | Organism | Who | ASSIGN | Assignment |
---|---|---|---|---|
cmr|NT05SA1881 | Staphylococcus aureus NCTC 8325 | conserved hypothetical protein | ||
fig|12360.1.peg.9 | Staphylococcus aureus phage phi 11 | FIG | Phage phi 11 orf9 protein homolog | |
fig|320837.3.peg.47 | Bacteriophage 42e | FIG | Phage phi 11 orf9 protein homolog | |
fig|585151.3.peg.1555 | Staphylococcus aureus subsp. aureus C427 | FIG | Phage phi 11 orf9 protein homolog | |
fig|585152.3.peg.1832 | Staphylococcus aureus subsp. aureus D139 | FIG | Phage phi 11 orf9 protein homolog | |
fig|93061.3.peg.1963 | Staphylococcus aureus subsp. aureus NCTC 8325 | FIG | Phage phi 11 orf9 protein homolog | |
gb|AAL82237.1 | Staphylococcus aureus phage phi 11 | phi PV83 orf 10-like protein | ||
gb|AAX91141.1 | Bacteriophage 42e | ORF029 | ||
gb|ABD31130.1 | Staphylococcus aureus subsp. aureus NCTC 8325 | phi PV83 orf 10-like protein | ||
gi|18920496 | Staphylococcus aureus phage phi 11 | NCBI | phi PV83 orf 10-like protein | |
gi|29028572 | Staphylococcus phage 11 | NCBI | phi PV83 orf 10-like protein | |
gi|62636030 | Bacteriophage 42e | NCBI | ORF029 | |
gi|66395537 | Staphylococcus phage 42E | NCBI | ORF029 | |
gi|87203320 | Staphylococcus aureus subsp. aureus NCTC 8325 | NCBI | phi PV83 orf 10-like protein | |
gi|88195762 | Staphylococcus aureus subsp. aureus NCTC 8325 | NCBI | phi PV83 orf 10-like protein | |
img|637894705 | Staphylococcus aureus aureus NCTC 8325 | IMG | phi PV83 orf 10-like protein | |
img|638297004 | Staphylococcus phage 11 | IMG | phi PV83 orf 10-like protein | |
img|638314318 | Bacteriophage 42e | IMG | ORF029 | |
kegg|sao:SAOUHSC_02078 | Staphylococcus aureus subsp. aureus NCTC 8325 | KEGG | phi PV83 orf 10-like protein | |
ref|NP_803262.1 | Staphylococcus phage 11 | RefSeq | phi PV83 orf 10-like protein | |
ref|YP_239899.1 | Staphylococcus phage 42E | RefSeq | ORF029 | |
ref|YP_500571.1 | Staphylococcus aureus subsp. aureus NCTC 8325 | RefSeq | phi PV83 orf 10-like protein | |
tr|Q2FX27 | Staphylococcus aureus (strain NCTC 8325) | TrEMBL | Phi PV83 orf 10-like protein | |
tr|Q4ZCX7 | Staphylococcus phage 42E | TrEMBL | ORF029 | |
tr|Q8SDW8 | Staphylococcus phage phi11 (Bacteriophage phi-11) | TrEMBL | Phi PV83 orf 10-like protein |
Score | Peg | Function |
---|
Key Link Explains Key |
Value |
---|
Compare Regions |
| Psi-Blast | TMpred | TMHMM | Gram negative PSORT | Gram negative SignalP | Gram positive PSORT | Gram positive SignalP | LipoP | Radar | PPSearch | Gram negative CELLO | Gram positive CELLO | ProDom | PDB | RNAFold |
> Show tool descriptions