The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|93061.5.peg.1880: Staphylococcus aureus subsp. aureus NCTC 8325

This feature in The SEED Viewer

NCBI Taxonomy Id: 93061

Current Assignment: Phage phi 11 orf12 protein homolog
Translate Function Assignments



Context on contig NC_007795 from base 1953334 to 1964348 (11015 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1869 1953693 1953334 360 -           Phage phi 11 orf21 protein homolog locus|SAOUHSC_02061, protein_id|YP_500554.1, gi|88195745, geneID|3919748
1870 1953963 1953694 270 - 0         Phage transcriptional regulator cro locus|SAOUHSC_02062, protein_id|YP_500555.1, gi|88195746, geneID|3919749
1871 1954149 1953964 186 - 0         Phage phi 11 orf19 protein homolog locus|SAOUHSC_02063, protein_id|YP_500556.1, gi|88195747, geneID|3919750
1872 1954558 1954154 405 - 4         Phage phi 11 orf18 protein homolog locus|SAOUHSC_02064, protein_id|YP_500557.1, gi|88195748, geneID|3919751
1873 1954790 1954569 222 - 10         Phage phi 11 orf17 protein homolog locus|SAOUHSC_02065, protein_id|YP_500558.1, gi|88195749, geneID|3919752
1874 1954973 1954794 180 - 3         Phage protein locus|SAOUHSC_02066, protein_id|YP_500559.1, gi|88195750, geneID|3919753
1875 1956247 1955006 1242 - 32         Phage DNA helicase (EC 3.6.4.12) locus|SAOUHSC_02067, protein_id|YP_500560.1, gi|88195751, geneID|3919754
1876 1956600 1956244 357 - -4         Hypothetical protein, SAB1742c homolog [SA bacteriophages 11, Mu50B] locus|SAOUHSC_02068, protein_id|YP_500561.1, gi|88195752, geneID|3919755
1877 1957406 1956600 807 - -1         Phage replication initiation protein locus|SAOUHSC_02069, protein_id|YP_500562.1, gi|88195753, geneID|3919756
1878 1958070 1957378 693 - -29         Phage phi 11 orf14 protein homolog locus|SAOUHSC_02070, protein_id|YP_500563.1, gi|88195754, geneID|3919757
1879 1958637 1958083 555 - 12         Phage ssDNA binding protein locus|SAOUHSC_02071, protein_id|YP_500564.1, gi|88195755, geneID|3919758
1880 1959446 1958667 780 - 29         Phage phi 11 orf12 protein homolog locus|SAOUHSC_02072, protein_id|YP_500565.1, gi|88195756, geneID|3919759
1881 1959983 1959447 537 - 0         Phage phi 11 orf61 protein homolog locus|SAOUHSC_02073, protein_id|YP_500566.1, gi|88195757, geneID|3919760
1882 1960256 1959996 261 - 12         Phage phi 11 orf11 protein homolog locus|SAOUHSC_02074, protein_id|YP_500567.1, gi|88195758, geneID|3919761
1883 1960566 1960237 330 - -20         Phage protein locus|SAOUHSC_02075, protein_id|YP_500568.1, gi|88195759, geneID|3919762
1884 1960817 1960656 162 - 89         Phage phi 11 orf10a protein homolog locus|SAOUHSC_02076, protein_id|YP_500569.1, gi|88195760, geneID|3919763
1885 1961031 1960810 222 - -8         Phage phi 11 orf10 protein homolog locus|SAOUHSC_02077, protein_id|YP_500570.1, gi|88195761, geneID|3919764
1886 1961494 1961045 450 - 13         Phage phi 11 orf9 protein homolog locus|SAOUHSC_02078, protein_id|YP_500571.1, gi|88195762, geneID|3919765
1887 1961760 1961536 225 - 41         Phage phi 11 orf8 protein homolog locus|SAOUHSC_02079, protein_id|YP_500572.1, gi|88195763, geneID|3919766
1888 1962552 1961761 792 - 0         Phage antirepressor protein locus|SAOUHSC_02080, protein_id|YP_500573.1, gi|88195764, geneID|3919767
1889 1963017 1962709 309 - 156         Phage protein locus|SAOUHSC_02081, protein_id|YP_500574.1, gi|88195765, geneID|3919768
1890 1963250 1963032 219 - 14         Phage transcriptional regulator cro locus|SAOUHSC_02083, protein_id|YP_500575.1, gi|88195766, geneID|3919769
1891 1963392 1964111 720 + 141         Phage repressor protein cI locus|SAOUHSC_02084, protein_id|YP_500576.1, gi|88195767, geneID|3919770
1892 1964181 1964348 168 + 69         Phage protein locus|SAOUHSC_02085, protein_id|YP_500577.1, gi|88195768, geneID|3919771

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|93061.5.peg.1880 Phage phi 11 orf12 protein homolog
MTEKTNQDVDILTQLGVKDISKQNANKFYKFAIYGKFGTGKTTFLTKDNNALVLDINEDG
TTVTEDGAVVQIKNYKHFSAVIKMLPKIIEQLRENGKQIDVVVIETIQKLRDITMDDIMD
GKSKKPTFNDWGECATRIVSIYRYISKLQEHYQFHLAISGHEGINKDKDDEGSTINPTIT
IEAQDQIKKAVISQSDVLARMTIEEHEQDGEKTYQYVLNAEPSNLFETKIRHSSNIKINN
KRFINPSINDVVQAIRNGN

MD5 = 7c32874b0af989d76cf8f7cf5dc67911


  DNA Sequence

>fig|93061.5.peg.1880 Phage phi 11 orf12 protein homolog
atgactgaaaaaactaatcaagatgtcgatattttaacgcaactaggtgtaaaagacatc
agcaaacaaaatgcaaacaagttttataaatttgcgatatacggcaagttcggtactggt
aaaactacgtttttaacaaaagataacaatgccttagtactagatataaatgaggacgga
acaacggtaacagaagatggggcagttgtgcagattaagaattataagcattttagtgca
gtgattaaaatgctgcctaaaattattgaacaactaagagaaaacggaaaacaaattgat
gttgtagtgattgaaacaatccaaaagttacgtgatatcactatggacgacatcatggac
ggtaaatcaaagaaaccgacatttaatgattggggcgagtgtgctacacgcattgtaagt
atttatcgttatatttctaaattacaagaacattatcaatttcatcttgctataagcgga
cacgagggcattaacaaagacaaagatgatgagggaagtactatcaatccaacaatcacg
atagaggcacaagaccaaataaaaaaagcagtcatcagtcaatctgacgtgttagcaaga
atgacaatagaagaacatgagcaagacggcgaaaaaacttatcaatatgtacttaacgct
gaaccatcaaatttattcgagacaaagataagacactcaagcaacatcaaaattaacaac
aaacgtttcattaatccaagtattaacgatgttgtacaagcaattagaaatggtaattaa


  DNA with Flanking Sequence

>fig|93061.5.peg.1880 Phage phi 11 orf12 protein homolog
aacaagacgaccgattcaaagtaactgatctagacagtgctaactgggtttttaagaaac
tggatgcaatcacaactaaagagaatgaaatcaacgatttagcaaataaagaaattgaac
gcataaacgaatggaaagataaagaagtagaaaaattacagagtggcaaagaatatttac
aaagccttgtaattgaatattacagaatacaaaaagaacaagatagcaaattcaagttga
atacaccttacggaaaagtgacagccagaaaaggttcaaaagtcattcaagttagcaatg
agcaagaagtcattaaacaacttgagcaacgaggttttgacaactatgtaaaagtaacta
aaaaacttagccaatcagacattaagaaagatttcaatgtaactgaaaacggcacattga
ttgacgcaaacggcgaagttttagagggtgctagcattgtggagaaaccaacgtcataca
cggtaaaggtgggagaatagatgactgaaaaaactaatcaagatgtcgatattttaacgc
aactaggtgtaaaagacatcagcaaacaaaatgcaaacaagttttataaatttgcgatat
acggcaagttcggtactggtaaaactacgtttttaacaaaagataacaatgccttagtac
tagatataaatgaggacggaacaacggtaacagaagatggggcagttgtgcagattaaga
attataagcattttagtgcagtgattaaaatgctgcctaaaattattgaacaactaagag
aaaacggaaaacaaattgatgttgtagtgattgaaacaatccaaaagttacgtgatatca
ctatggacgacatcatggacggtaaatcaaagaaaccgacatttaatgattggggcgagt
gtgctacacgcattgtaagtatttatcgttatatttctaaattacaagaacattatcaat
ttcatcttgctataagcggacacgagggcattaacaaagacaaagatgatgagggaagta
ctatcaatccaacaatcacgatagaggcacaagaccaaataaaaaaagcagtcatcagtc
aatctgacgtgttagcaagaatgacaatagaagaacatgagcaagacggcgaaaaaactt
atcaatatgtacttaacgctgaaccatcaaatttattcgagacaaagataagacactcaa
gcaacatcaaaattaacaacaaacgtttcattaatccaagtattaacgatgttgtacaag
caattagaaatggtaattaaaaattaattaaaaggacggtataaaaattatgaaaatcac
tggtagaacacaatacattcaagaaactaatcaagaggcattcatgaaaggtggggactt
tttaggagctggagaatttacagtaaaagttgcaaatgtcgagtttaacgacagagaaaa
cagatacttcacgattgtttttgaaaacaacgaaggtaaacaatacaaacacaaccaatt
cgtcccaccattccaacaagattatcaagaaaaacaatatatcgagttacttagtagatt
aggaattaaattgaacttaccagatttaacttttgacacagatcaattaattaacaaaat
cggaactattgtacttaaaaataaatttaacgaggaacaaggcaagtattttgtaagact
ctcatatgtaaaagtttggaataaagacgatgaagtagttaataaaccagaacctaaaac
tgatgagatgaaacaaaaagaacagcaagcaaatgggaaa


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
cmr|NT05SA1875 Staphylococcus aureus NCTC 8325     conserved hypothetical protein
fig|12360.1.peg.12 Staphylococcus aureus phage phi 11 FIG   Phage phi 11 orf12 protein homolog
fig|320847.3.peg.30 Bacteriophage 52A FIG   Phage phi 11 orf12 protein homolog
fig|405947.2.peg.13 Siphoviridae Staphylococcus phage 80 FIG   Phage phi 11 orf12 protein homolog
fig|680649.3.peg.2344 Staphylococcus aureus subsp. aureus MR1 FIG   Phage phi 11 orf12 protein homolog
fig|93061.3.peg.1957 Staphylococcus aureus subsp. aureus NCTC 8325 FIG   Phage phi 11 orf12 protein homolog
gb|AAL82240.1 Staphylococcus aureus phage phi 11     phi ETA orf 17-like protein
gb|AAX91810.1 Bacteriophage 52A     ORF016
gb|ABD31124.1 Staphylococcus aureus subsp. aureus NCTC 8325     conserved hypothetical phage protein
gb|ABJ88861.1 Staphylococcus phage 80     conserved hypothetical protein
gi|116235526 Staphylococcus phage 80 NCBI   conserved hypothetical protein
gi|18920499 Staphylococcus aureus phage phi 11 NCBI   phi ETA orf 17-like protein
gi|29028575 Staphylococcus phage 11 NCBI   phi ETA orf 17-like protein
gi|62636699 Bacteriophage 52A NCBI   ORF016
gi|66396283 Staphylococcus phage 52A NCBI   ORF016
gi|87203314 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   conserved hypothetical phage protein
gi|88195756 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   hypothetical protein SAOUHSC_02072
img|637894699 Staphylococcus aureus aureus NCTC 8325 IMG   hypothetical protein
img|638297007 Staphylococcus phage 11 IMG   phi ETA orf 17-like protein
img|638315070 Bacteriophage 52A IMG   ORF016
kegg|sao:SAOUHSC_02072 Staphylococcus aureus subsp. aureus NCTC 8325 KEGG   hypothetical protein
ref|NP_803265.1 Staphylococcus phage 11 RefSeq   phi ETA orf 17-like protein
ref|YP_240651.1 Staphylococcus phage 52A RefSeq   ORF016
ref|YP_500565.1 Staphylococcus aureus subsp. aureus NCTC 8325 RefSeq   hypothetical protein SAOUHSC_02072
tr|A7YGQ5 Staphylococcus phage 80 TrEMBL   Putative uncharacterized protein
tr|Q2FX33 Staphylococcus aureus (strain NCTC 8325) TrEMBL   Conserved hypothetical phage protein
tr|Q4ZAS5 Staphylococcus phage 52A TrEMBL   ORF016
tr|Q8SDW5 Staphylococcus phage phi11 (Bacteriophage phi-11) TrEMBL   Phi ETA orf 17-like protein


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search