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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|93061.5.peg.1870: Staphylococcus aureus subsp. aureus NCTC 8325

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NCBI Taxonomy Id: 93061

Current Assignment: Phage transcriptional regulator cro
Translate Function Assignments



Context on contig NC_007795 from base 1947236 to 1959446 (12211 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1856 1948771 1947236 1536 -           Phage portal locus|SAOUHSC_02048, protein_id|YP_500541.1, gi|88195732, geneID|3920498
1857 1950059 1948782 1278 - 10         Phage terminase, large subunit locus|SAOUHSC_02049, protein_id|YP_500542.1, gi|88195733, geneID|3920499
1858 1950486 1950046 441 - -14         Phage terminase, small subunit locus|SAOUHSC_02050, protein_id|YP_500543.1, gi|88195734, geneID|3920500
1859 1951095 1950673 423 - 186         Phage integrase regulator RinA locus|SAOUHSC_02051, protein_id|YP_500544.1, gi|88195735, geneID|3920501
1860 1951265 1951119 147 - 23         Phage protein ORF120 locus|SAOUHSC_02052, protein_id|YP_500545.1, gi|88195736, geneID|3920502
1861 1951439 1951266 174 - 0         Transcriptional activator rinB, phage associated locus|SAOUHSC_02053, protein_id|YP_500546.1, gi|88195737, geneID|3919740
1862 1951642 1951442 201 - 2         hypothetical protein locus|SAOUHSC_02054, protein_id|YP_500547.1, gi|88195738, geneID|3919741
1863 1951805 1951617 189 - -26         Phage phi 11 orf26a protein homolog locus|SAOUHSC_02055, protein_id|YP_500548.1, gi|88195739, geneID|3919742
1864 1952047 1951802 246 - -4         Hypothetical protein, SLT orf81b homolog [SA bacteriophages 11, Mu50B] locus|SAOUHSC_02056, protein_id|YP_500549.1, gi|88195740, geneID|3919743
1865 1952593 1952084 510 - 36         Phage deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) locus|SAOUHSC_02057, protein_id|YP_500550.1, gi|88195741, geneID|3919744
1866 1952828 1952586 243 - -8         Phage protein locus|SAOUHSC_02058, protein_id|YP_500551.1, gi|88195742, geneID|3919745
1867 1953073 1952825 249 - -4         hypothetical protein locus|SAOUHSC_02059, protein_id|YP_500552.1, gi|88195743, geneID|3919746
1868 1953333 1953085 249 - 11         Phage phi 11 orf22 protein homolog locus|SAOUHSC_02060, protein_id|YP_500553.1, gi|88195744, geneID|3919747
1869 1953693 1953334 360 - 0         Phage phi 11 orf21 protein homolog locus|SAOUHSC_02061, protein_id|YP_500554.1, gi|88195745, geneID|3919748
1870 1953963 1953694 270 - 0         Phage transcriptional regulator cro locus|SAOUHSC_02062, protein_id|YP_500555.1, gi|88195746, geneID|3919749
1871 1954149 1953964 186 - 0         Phage phi 11 orf19 protein homolog locus|SAOUHSC_02063, protein_id|YP_500556.1, gi|88195747, geneID|3919750
1872 1954558 1954154 405 - 4         Phage phi 11 orf18 protein homolog locus|SAOUHSC_02064, protein_id|YP_500557.1, gi|88195748, geneID|3919751
1873 1954790 1954569 222 - 10         Phage phi 11 orf17 protein homolog locus|SAOUHSC_02065, protein_id|YP_500558.1, gi|88195749, geneID|3919752
1874 1954973 1954794 180 - 3         Phage protein locus|SAOUHSC_02066, protein_id|YP_500559.1, gi|88195750, geneID|3919753
1875 1956247 1955006 1242 - 32         Phage DNA helicase (EC 3.6.4.12) locus|SAOUHSC_02067, protein_id|YP_500560.1, gi|88195751, geneID|3919754
1876 1956600 1956244 357 - -4         Hypothetical protein, SAB1742c homolog [SA bacteriophages 11, Mu50B] locus|SAOUHSC_02068, protein_id|YP_500561.1, gi|88195752, geneID|3919755
1877 1957406 1956600 807 - -1         Phage replication initiation protein locus|SAOUHSC_02069, protein_id|YP_500562.1, gi|88195753, geneID|3919756
1878 1958070 1957378 693 - -29         Phage phi 11 orf14 protein homolog locus|SAOUHSC_02070, protein_id|YP_500563.1, gi|88195754, geneID|3919757
1879 1958637 1958083 555 - 12         Phage ssDNA binding protein locus|SAOUHSC_02071, protein_id|YP_500564.1, gi|88195755, geneID|3919758
1880 1959446 1958667 780 - 29         Phage phi 11 orf12 protein homolog locus|SAOUHSC_02072, protein_id|YP_500565.1, gi|88195756, geneID|3919759

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  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|93061.5.peg.1870 Phage transcriptional regulator cro
MKLNEVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALG
VNVSELFTRNHNTHKLEDWIKKSKCIEVE

MD5 = 23b160653c4919f2620b61c60eff73cc


  DNA Sequence

>fig|93061.5.peg.1870 Phage transcriptional regulator cro
atgaagttgaacgaagtattcgcaactaatttaagggtaatcatggctagagataacgta
agtgtccaagatttgcacaatgaaactggcgtatcaagatcaactattagtggatataaa
aacggaaaagctgagatggttaacttaaatgtattagataaattggcagatgctctaggt
gttaatgtaagtgaactatttactagaaatcacaacacgcacaaattagaggattggatt
aaaaaaagtaaatgtatagaggtggaataa


  DNA with Flanking Sequence

>fig|93061.5.peg.1870 Phage transcriptional regulator cro
gaatggcactaactatgatcgtatcgaaatacaaccgaaatttgaattacaacctaaatt
cgggaaacaaagaccgattacgtatatagccgatttctctttgtggaaggaagggaaact
ggttgaagttatagacgttaaaggtaaggcgactgaagttgccaacatcaaagcgaagat
attcagatatcagtatagagatgtgaatttaacgtggatatgtaaagcgcctaaatacac
aggtcaagaatggatggtatatgaggacttagtgaaagtcagacgtaaaagaaaaagaga
aatgaagtgatctaatgcaacaacaagcatatataaacgcaacgattgatataagaatac
ctacagaagttgaatatcagcattacgatgatgtggataaagaaaaagatacgctggcaa
agcgcttagatgacaatccggacgaattactaaagtatgacaacataacaataagacatg
catatatagaggtggaataaatgaagttgaacgaagtattcgcaactaatttaagggtaa
tcatggctagagataacgtaagtgtccaagatttgcacaatgaaactggcgtatcaagat
caactattagtggatataaaaacggaaaagctgagatggttaacttaaatgtattagata
aattggcagatgctctaggtgttaatgtaagtgaactatttactagaaatcacaacacgc
acaaattagaggattggattaaaaaaagtaaatgtatagaggtggaataaatgagtatcg
taaagattaacggtaaaccatataaatttaccgaacatgaaaatgaattgataaaaaaga
acggtttaactccaggaatggttgcaaaaagagtacgaggtggctgggcgttgttagaag
ccttacatgcaccttatggtatgcgcttagctgagtataaagaaattgtgttatccaaaa
tcatggagcgagagagcaaagagcgtgaaatggctaggcaacgacgtaaagaggctgaac
tacgtaagaagaagccacatttgtttaatgtgcctcaaaaacattcacgtgatccgtact
ggtttgatactacttataaccaaatgtttaagaaatggcaggaagcataaatgcctaaaa
ccgatagcgcatgtaaagaatacttaaaccaatttttcggatctaagagatatctgtatc
aggataacgaacgagtggcacatatccatgtagtgaacggcacttattactttcatgggc
atatcgtgcc


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0043565       F:sequence-specific DNA binding
cmr|NT05SA1865 Staphylococcus aureus NCTC 8325     helix-turn-helix domain protein
fig|12360.1.peg.20 Staphylococcus aureus phage phi 11 FIG   Phage transcriptional regulator cro
fig|320837.3.peg.62 Bacteriophage 42e FIG   Phage transcriptional regulator cro
fig|93061.3.peg.1947 Staphylococcus aureus subsp. aureus NCTC 8325 FIG   Phage transcriptional regulator cro
gb|AAL82248.1 Staphylococcus aureus phage phi 11     HTH DNA binding protein
gb|AAX91163.1 Bacteriophage 42e     ORF058
gb|ABD31114.1 Staphylococcus aureus subsp. aureus NCTC 8325     helix-turn-helix DNA binding protein
gi|18920507 Staphylococcus aureus phage phi 11 NCBI   HTH DNA binding protein
gi|29028583 Staphylococcus phage 11 NCBI   HTH DNA binding protein
gi|62636052 Bacteriophage 42e NCBI   ORF058
gi|66395559 Staphylococcus phage 42E NCBI   ORF058
gi|87203304 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   helix-turn-helix DNA binding protein
gi|88195746 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   helix-turn-helix DNA binding protein
img|637894689 Staphylococcus aureus aureus NCTC 8325 IMG   helix-turn-helix DNA binding protein
img|638297015 Staphylococcus phage 11 IMG   HTH DNA binding protein
img|638314334 Bacteriophage 42e IMG   ORF058
kegg|sao:SAOUHSC_02062 Staphylococcus aureus subsp. aureus NCTC 8325 KEGG   helix-turn-helix DNA binding protein
ref|NP_803273.1 Staphylococcus phage 11 RefSeq   HTH DNA binding protein
ref|YP_239915.1 Staphylococcus phage 42E RefSeq   ORF058
ref|YP_500555.1 Staphylococcus aureus subsp. aureus NCTC 8325 RefSeq   helix-turn-helix DNA binding protein
tr|Q2FX38 Staphylococcus aureus (strain NCTC 8325) TrEMBL   Helix-turn-helix DNA binding protein
tr|Q4ZCW1 Staphylococcus phage 42E TrEMBL   ORF058
tr|Q8SDV8 Staphylococcus phage phi11 (Bacteriophage phi-11) TrEMBL   HTH DNA binding protein


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  Attributes

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  Protein Families

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