The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|93061.3.peg.1965: Staphylococcus aureus subsp. aureus NCTC 8325

This feature in The SEED Viewer

NCBI Taxonomy Id: 93061

Current Assignment: Phage antirepressor protein
Translate Function Assignments



Context on contig NC_007795 from base 1918534 to 1968119 (49586 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
pp.2 1918534 1967285 48752 +           Prophage 2. Evidence: 15 nt repeat confirmed by Ramy; attL: fig|93061.3.att.3; attR: fig|93061.3.att.4  
1954 1957406 1956600 807 - -10686     1: 1 ff
isu
Phage replication initiation protein cds.1954, GeneID:3919756, LocusTag:SAOUHSC_02069, YP_500562.1, gi|88195753
1955 1958070 1957378 693 - -29     1: 1 ff
isu
Phage phi 11 orf14 protein homolog cds.1955, GeneID:3919757, LocusTag:SAOUHSC_02070, YP_500563.1, gi|88195754
1956 1958583 1958083 501 - 12     1: 1 ff
isu
Single stranded DNA binding protein, phage-associated cds.1956, GeneID:3919758, LocusTag:SAOUHSC_02071, YP_500564.1, gi|88195755
1957 1959446 1958667 780 - 83     1: 1 isu Phage phi 11 orf12 protein homolog cds.1957, GeneID:3919759, LocusTag:SAOUHSC_02072, YP_500565.1, gi|88195756
1958 1959983 1959447 537 - 0         Phage phi 11 orf61 protein homolog cds.1958, GeneID:3919760, LocusTag:SAOUHSC_02073, YP_500566.1, gi|88195757
1959 1960316 1959996 321 - 12     1: 1 ff
isu
Phage phi 11 orf11 protein homolog cds.1959, GeneID:3919761, LocusTag:SAOUHSC_02074, YP_500567.1, gi|88195758
1960 1960566 1960237 330 - -80       ff Phage protein cds.1960, GeneID:3919762, LocusTag:SAOUHSC_02075, YP_500568.1, gi|88195759
1961 1960817 1960656 162 - 89         Phage phi 11 orf10a protein homolog cds.1961, GeneID:3919763, LocusTag:SAOUHSC_02076, YP_500569.1, gi|88195760
1962 1961094 1960810 285 - -8     1: 1 ff
isu
Hypothetical protein, PV83 orf12 homolog [SA bacteriophages 11, Mu50B] cds.1962, GeneID:3919764, LocusTag:SAOUHSC_02077, YP_500570.1, gi|88195761
1963 1961494 1961045 450 - -50     1: 1 ff
isu
Phage phi 11 orf9 protein homolog cds.1963, GeneID:3919765, LocusTag:SAOUHSC_02078, YP_500571.1, gi|88195762
1964 1961760 1961536 225 - 41     1: 1 ff
isu
Phage phi 11 orf8 protein homolog cds.1964, GeneID:3919766, LocusTag:SAOUHSC_02079, YP_500572.1, gi|88195763
sRNA.6 1961967 1962165 199 + 206     1: 2   6S RNA (Pichon, Felden, 2005)  
1965 1962552 1961761 792 - -405     2: 1 4 ff
isu
Phage antirepressor protein cds.1965, GeneID:3919767, LocusTag:SAOUHSC_02080, YP_500573.1, gi|88195764
1966 1963017 1962709 309 - 156       ff Phage protein cds.1966, GeneID:3919768, LocusTag:SAOUHSC_02081, YP_500574.1, gi|88195765
1967 1963250 1963032 219 - 14     1: 1 ff
isu
Phage transcriptional regulator cro cds.1967, GeneID:3919769, LocusTag:SAOUHSC_02083, YP_500575.1, gi|88195766
1968 1963392 1964111 720 + 141     1: 1 ff
isu
Phage repressor protein cI cds.1968, GeneID:3919770, LocusTag:SAOUHSC_02084, YP_500576.1, gi|88195767
1969 1964181 1964348 168 + 69         Phage protein cds.1969, GeneID:3919771, LocusTag:SAOUHSC_02085, YP_500577.1, gi|88195768
1970 1964508 1964693 186 + 159     1: 1 isu Phage phi 11 orf4 protein homolog cds.1970, GeneID:3919772, LocusTag:SAOUHSC_02086, YP_500578.1, gi|88195769
1971 1964729 1965634 906 + 35     1: 1 isu Phage phi 11 orf3 protein homolog cds.1971, GeneID:3919773, LocusTag:SAOUHSC_02087, YP_500579.1, gi|88195770
1972 1965771 1965571 201 - -64     1: 1 ff
isu
Phage excisionase cds.1972, GeneID:3919774, LocusTag:SAOUHSC_02088, YP_500580.1, gi|88195771
1973 1965883 1966929 1047 + 111     1: 1 ff
isu
Phage integrase cds.1973, GeneID:3919775, LocusTag:SAOUHSC_02089, YP_500581.1, gi|88195772
att.4 1967271 1967285 15 + 341         attR for fig|93061.3.pp.2  
1974 1966974 1968119 1146 + -312     1: 3 ff
isu
Hypothetical protein SAV1877 cds.1974, GeneID:3919776, LocusTag:SAOUHSC_02090, YP_500582.1, gi|88195773

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Phage_experimental RamyA Phage antirepressor protein
Staphylococcal_phi-Mu50B-like_prophages SvetaG Antirepressor [SA bacteriophages 11, Mu50B]


  Protein Sequence

>fig|93061.3.peg.1965 Phage antirepressor protein
MQALQTFNFKELPVRTVEIENEPYFVGKDIAEILGYARSDNAIRNHVDSEDKLTHQFSAS
GQNRNMIIINESGLYSLIFDASKQSKNEKIRETARKFKRWVTSDVLPAIRKHGIYATDNV
IEQTLKDPDYIITVLTEYKKEKEQNLLLQQEIGELKPKADYVDEILKSTGTLATTQIAAD
YGISAQKLNKLLHEARLQRKVNKQWVLYSEHMGKSYTDSDTITIVRSDGREDTVLQTRWT
QKGRLKIHEIMTEFGYEANLGGA

MD5 = 4ce6e429fca1bdba6bc9ec8974132828


  DNA Sequence

>fig|93061.3.peg.1965 Phage antirepressor protein
atgcaagcattacaaacatttaattttaaagagctaccagtaagaacagtagaaattgaa
aacgaaccttattttgtaggaaaagatattgctgagattttaggatatgcaagatcagac
aatgccattagaaatcatgttgatagcgaggacaaactgacgcaccaatttagtgcatca
ggtcaaaacagaaatatgatcattatcaacgaatcaggattatacagtctaatcttcgat
gcttctaaacaaagcaaaaacgaaaaaattagagaaaccgctagaaaattcaaacgctgg
gtaacatcagatgtcctaccagctattcgcaaacacggtatatacgcaacagacaatgta
attgaacaaacattaaaagatccagactacatcattacagtgttgactgagtataagaaa
gaaaaagagcaaaacttacttttacaacaagaaattggagagctaaaacccaaagcagat
tatgttgatgaaatcttaaaatcaactggcacattagccacaactcaaatcgcggcagac
tacggtatatcagcacaaaagttaaacaaactactacacgaagctagactacaacgaaaa
gtaaataaacagtgggtgctttactcagaacacatgggcaagagttacacagattcagac
actataacaattgtgcgttctgatggcagagaagacacagttttacaaactagatggaca
caaaaaggcagattgaaaatacatgaaatcatgactgaattcggttatgaagctaattta
gggggagcgtaa


  DNA with Flanking Sequence

>fig|93061.3.peg.1965 Phage antirepressor protein
aaacgcaaacaaacatcttaaaggagacataacaaatgcaagaccaatcattaaaattag
taaaactacaactaaaatatcataacctttcaggacaaattgaagcttatgataaatcac
ttaaagaaataagatacactcgagatcttttcaacaaacatctaagcatgaataacgaag
acgcatttgctggtttggaaatggtagaagatgaaattactaaaaagctacgaagtgcta
tcaaagagttccaaaaagtagtgaaagcgttagacaagcttaacggtgttgaaagcgata
acaaagttactgatttaacagagtggcggaaagtgaatcagtaacattcacttcttaata
taaccacgcttatcaacatccacattgagcagatgtgagcgagagctggcgatgatatga
gccgcgtttaaatacattcgatagtcattgcgataaccgtctgctgaatgtgggtgttga
ggaaaaaggaggatactcaaatgcaagcattacaaacatttaattttaaagagctaccag
taagaacagtagaaattgaaaacgaaccttattttgtaggaaaagatattgctgagattt
taggatatgcaagatcagacaatgccattagaaatcatgttgatagcgaggacaaactga
cgcaccaatttagtgcatcaggtcaaaacagaaatatgatcattatcaacgaatcaggat
tatacagtctaatcttcgatgcttctaaacaaagcaaaaacgaaaaaattagagaaaccg
ctagaaaattcaaacgctgggtaacatcagatgtcctaccagctattcgcaaacacggta
tatacgcaacagacaatgtaattgaacaaacattaaaagatccagactacatcattacag
tgttgactgagtataagaaagaaaaagagcaaaacttacttttacaacaagaaattggag
agctaaaacccaaagcagattatgttgatgaaatcttaaaatcaactggcacattagcca
caactcaaatcgcggcagactacggtatatcagcacaaaagttaaacaaactactacacg
aagctagactacaacgaaaagtaaataaacagtgggtgctttactcagaacacatgggca
agagttacacagattcagacactataacaattgtgcgttctgatggcagagaagacacag
ttttacaaactagatggacacaaaaaggcagattgaaaatacatgaaatcatgactgaat
tcggttatgaagctaatttagggggagcgtaaatgacaccagaacaaaaagaaaagctaa
acaatatagtattaacactttatgcagttaaagaaaacaaaagtcaaacatacacacaca
aagatactcttactgtgacatatgcaggcgagattgagcacacttacgaagtcgacagag
agaaacaccttgaatcaatgattgagtgggcaattgaccaaatcgaacagcactttgatt
tagacgaagaagaataacacacacaattgaacaaacaacttaataggaggaattacaaat
gaacgcactatacaaaacaaccctcctcaccacaatggcagttgtgacgtggaaggtttg
gaagattgaacgaaatacgagaaagcctgtaatcaatagaaatgattttagtaaagagtc
tacagcagaaacgattgagcgacacagtgatcctgattcaggaataaaactacttaaggc
attttccgacttcactaaacaagctgaaaagcaaaaacctacactaggagaa


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
GO:0003677       F:DNA binding
cmr|NT05SA1883 Staphylococcus aureus NCTC 8325     anti-repressor
fig|320837.3.peg.45 Bacteriophage 42e FIG   Phage antirepressor protein
fig|93061.5.peg.1888 Staphylococcus aureus subsp. aureus NCTC 8325 FIG   Phage antirepressor protein
gb|AAX91125.1 Bacteriophage 42e     ORF013
gb|ABD31132.1 Staphylococcus aureus subsp. aureus NCTC 8325     bacteriophage L54a, antirepressor, putative
gi|62636014 Bacteriophage 42e NCBI   ORF013
gi|66395521 Staphylococcus phage 42E NCBI   ORF013
gi|87203322 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   bacteriophage L54a, antirepressor, putative
gi|88195764 Staphylococcus aureus subsp. aureus NCTC 8325 NCBI   bacteriophage L54a, antirepressor, putative
img|637894707 Staphylococcus aureus aureus NCTC 8325 IMG   bacteriophage L54a, antirepressor, putative
img|638314316 Bacteriophage 42e IMG   ORF013
kegg|sao:SAOUHSC_02080 Staphylococcus aureus subsp. aureus NCTC 8325 KEGG   bacteriophage L54a, antirepressor, putative
ref|YP_239897.1 Staphylococcus phage 42E RefSeq   ORF013
ref|YP_500573.1 Staphylococcus aureus subsp. aureus NCTC 8325 RefSeq   bacteriophage L54a, antirepressor, putative
tr|Q2FX25 Staphylococcus aureus (strain NCTC 8325) TrEMBL   Bacteriophage L54a, antirepressor, putative
tr|Q4ZCX9 Staphylococcus phage 42E TrEMBL   ORF013


  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value
CDD::33416 974.100;1-152
evidence_code ff
evidence_code isu;Staphylococcal_phi-Mu50B-like_prophages
isoelectric_point 7.18
molecular_weight 30174
PFAM::PF02498 968.630;13-107
PSORT::Cytoplasmic 8.87
PSORT_score::Cytoplasmic 8.87
similar_to_human no


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search