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SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
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Protein fig|869684.5.peg.5500: Escherichia coli 5.0959

This feature in The SEED Viewer

NCBI Taxonomy Id: 869684

Current Assignment: DNA primase (EC 2.7.7.-), phage-associated
Translate Function Assignments


Context on contig AEZX02000028 from base 436 to 7766 (7331 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
5491 436 744 309 +           Integrase locus|EC50959_3532, protein_id|EII07889.1, gi|386203364
5492 1222 1803 582 + 477         COG3617: Prophage antirepressor locus|EC50959_3534, protein_id|EII07903.1, gi|386203378
5493 2103 1924 180 - 120         conserved hypothetical protein locus|EC50959_3535, protein_id|EII07888.1, gi|386203363
5494 2336 2503 168 + 232         FIG00643952: hypothetical protein locus|EC50959_3536, protein_id|EII07898.1, gi|386203373
5495 2496 2720 225 + -8         FIG00638379: hypothetical protein locus|EC50959_3537, protein_id|EII07890.1, gi|386203365
5496 2713 3081 369 + -8         FIG00641729: hypothetical protein locus|EC50959_3538, protein_id|EII07896.1, gi|386203371
5497 3074 3307 234 + -8         FIG00641184: hypothetical protein locus|EC50959_3539, protein_id|EII07895.1, gi|386203370
5498 3300 3473 174 + -8         FIG00640024: hypothetical protein locus|EC50959_3540, protein_id|EII07894.1, gi|386203369
5499 3600 3746 147 + 126         FIG00638501: hypothetical protein locus|EC50959_3541, protein_id|EII07902.1, gi|386203377
5500 3743 5557 1815 + -4         DNA primase (EC 2.7.7.-), phage-associated locus|EC50959_3542, protein_id|EII07897.1, gi|386203372
5501 5911 6090 180 + 353         hypothetical protein locus|EC50959_3543, protein_id|EII07891.1, gi|386203366
5502 6087 6509 423 + -4         Putative single stranded DNA-binding protein of prophage gene_name|ssb, locus|EC50959_3544, protein_id|EII07900.1, gi|386203375
5503 7039 7170 132 + 529         hypothetical protein  
5504 7167 7766 600 + -4         Prophage Clp protease-like protein gene_name|clpP, locus|EC50959_3546, protein_id|EII07892.1, gi|386203367

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|869684.5.peg.5500 DNA primase (EC 2.7.7.-), phage-associated
MKLAPNVKKQPRGIKHKDTEVIIFAGSDAWAHAKQWQEHDARMAGDNEPPVVLADEQLKE
IGNLQIVPDGRTSARIFRAGQLDPVMVKAIGQKLAAASIQNANYYPDGMHSQKCENWREY
LARERKNIDDGLIIRFPAKKKTEDSATPLALNQMGASQRGEVLLAHYGGELAINADSDTV
HHYNGVVWEPVQDKELQRTMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMGNTARNLIGF
SNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKA
DRVLAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDARE
RALVVGFSLIIMPDMTRYAGDGAGIKAITGGDKVAIDPKHKAPYSTRIQAVVLAVNNNAM
SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELAVVIRHLLTRFSDQDEAKRLL
YEQQKSEEALVIKREGDSLVDFCGYLMSSVMCDGLLVGNAEIIPFSPRRYLYHAYLAYMR
AHGFGKPVTLTRFGKDMPGAMAEYGREYMKRKTKHGLRSNVILTEDSEDWMPSCASVTND
DGKN

MD5 = 2fc31edc775678d6fa268b17e6e710a4


  DNA Sequence

>fig|869684.5.peg.5500 DNA primase (EC 2.7.7.-), phage-associated
atgaaactggcaccgaacgtaaaaaaacagccacgcggaataaaacacaaagacacagag
gtaattattttcgcgggtagtgatgcctgggcacacgcgaaacaatggcaggaacacgat
gcgcgtatggctggagataatgagccacctgttgtgctggctgatgaacaactgaaagag
atcggaaatctgcaaatagtgcctgatgggcgcacatccgcgcgcatattcagagccgga
cagttagatcctgtaatggttaaggcaattggtcagaagctggcggcggcaagtatacag
aatgcgaattattaccctgatggcatgcacagccagaagtgtgagaactggcgtgaatac
cttgcccgtgagcgtaaaaacattgatgacggactgattatccggtttccggcaaagaaa
aaaacagaagacagcgcgacaccactggcacttaaccagatgggagcaagccagcgcggc
gaagttctcctggcacattatggcggtgaactggcaatcaatgcggattctgacaccgtt
caccactacaacggtgttgtatgggagccggtacaggataaagagttacagcggactatg
gcgcagatttttattgatgcggaaatcagctattcgcagaacgccatcaaatcggcggtc
gataccatgaagttaagtttgcccgtaatggggaatacagcccgtaacctgattggattc
agtaacggggtatttgataccagaactggtaattttcgggagcataacaaaaacgactgg
ttgttaattgccagtgaattacctttcagcccaccagcagagggggaaacgctggcaaca
catgcgccgaatttctggaagtggttgcgccgttcggtggctgagaatgaccgcaaggca
gatcgcgtactggcggcgttattcatggtgctggcgaatcggtacgactggcagttattt
cttgaggtaacggggccgggtggaagcggtaaaagcgtaatggcggagatttgcactatg
ctggcgggtaaggccaacacggtatcggcaagcatgaaggcgctggaagatgccagggaa
cgtgcgttagtggttggcttttcgctgattatcatgccggatatgacccgttacgctggt
gatggtgcagggattaaggccattacaggcggtgataaggtggcaatcgacccgaaacat
aaagccccctactcaacacgcattcaggcggtcgtgctggcggtgaacaataacgccatg
tcattcagtgaccgcagcggtgggatatcacgtcgtcgggtaatattcaatttttcggaa
gttgtaccggagaacgaacgtgaccctatgctggctgaaaaaatagaaggagagctggcg
gtagtgattcgccacctgcttacacgcttttctgaccaggacgaagctaaacgcctgcta
tatgagcagcagaaatcagaagaagccctggtgataaaacgcgagggcgattcgctggtg
gacttctgcggctatctcatgtcgtcggtaatgtgcgatggcctgttagtgggtaatgct
gaaattattccgttcagcccgcgcaggtatctctatcacgcctatctggcgtatatgagg
gcacacggattcggtaagcccgtaacactgacacgcttcggtaaggatatgccaggggca
atggcggaatacggcagggagtatatgaaacggaaaacgaagcatggcttgcgttcaaac
gtgatactgacagaggattcagaagactggatgccctcatgtgcatcggtcacaaatgac
gatggcaaaaattaa


  DNA with Flanking Sequence

>fig|869684.5.peg.5500 DNA primase (EC 2.7.7.-), phage-associated
atgcggaatatgtggcagagacgcgttacagaagaaaattcacggaggatgtaagccatg
cataatcatgaagcgcatgtacccgtagtgcttaatgtgccagatgatttcaccggacgc
gtactggtttacctggataaagggaaagtgaaatcacaatgccgactgaaaagtaatgag
attgttggttctcctgaattttttctgaactctgtattcgtgcggaaataaaaccggaac
tgctgacaggaaaataaaactatgaaaaagaaaaattctggctttactgccagcggtctc
tctcggcctgaaatcagactcggagatatttaccgcgacaccagacgtgggggacgagtg
gttattcgtcacgttacgccaggcaatatcacctaccgccgtgattttacgctggtggac
cattataaagccgtaaatcaaaaacgtgcagcaagctatatccgcaaaatccgtgaaatg
ctggttgcaggggggaaaaaatgaaactggcaccgaacgtaaaaaaacagccacgcggaa
taaaacacaaagacacagaggtaattattttcgcgggtagtgatgcctgggcacacgcga
aacaatggcaggaacacgatgcgcgtatggctggagataatgagccacctgttgtgctgg
ctgatgaacaactgaaagagatcggaaatctgcaaatagtgcctgatgggcgcacatccg
cgcgcatattcagagccggacagttagatcctgtaatggttaaggcaattggtcagaagc
tggcggcggcaagtatacagaatgcgaattattaccctgatggcatgcacagccagaagt
gtgagaactggcgtgaataccttgcccgtgagcgtaaaaacattgatgacggactgatta
tccggtttccggcaaagaaaaaaacagaagacagcgcgacaccactggcacttaaccaga
tgggagcaagccagcgcggcgaagttctcctggcacattatggcggtgaactggcaatca
atgcggattctgacaccgttcaccactacaacggtgttgtatgggagccggtacaggata
aagagttacagcggactatggcgcagatttttattgatgcggaaatcagctattcgcaga
acgccatcaaatcggcggtcgataccatgaagttaagtttgcccgtaatggggaatacag
cccgtaacctgattggattcagtaacggggtatttgataccagaactggtaattttcggg
agcataacaaaaacgactggttgttaattgccagtgaattacctttcagcccaccagcag
agggggaaacgctggcaacacatgcgccgaatttctggaagtggttgcgccgttcggtgg
ctgagaatgaccgcaaggcagatcgcgtactggcggcgttattcatggtgctggcgaatc
ggtacgactggcagttatttcttgaggtaacggggccgggtggaagcggtaaaagcgtaa
tggcggagatttgcactatgctggcgggtaaggccaacacggtatcggcaagcatgaagg
cgctggaagatgccagggaacgtgcgttagtggttggcttttcgctgattatcatgccgg
atatgacccgttacgctggtgatggtgcagggattaaggccattacaggcggtgataagg
tggcaatcgacccgaaacataaagccccctactcaacacgcattcaggcggtcgtgctgg
cggtgaacaataacgccatgtcattcagtgaccgcagcggtgggatatcacgtcgtcggg
taatattcaatttttcggaagttgtaccggagaacgaacgtgaccctatgctggctgaaa
aaatagaaggagagctggcggtagtgattcgccacctgcttacacgcttttctgaccagg
acgaagctaaacgcctgctatatgagcagcagaaatcagaagaagccctggtgataaaac
gcgagggcgattcgctggtggacttctgcggctatctcatgtcgtcggtaatgtgcgatg
gcctgttagtgggtaatgctgaaattattccgttcagcccgcgcaggtatctctatcacg
cctatctggcgtatatgagggcacacggattcggtaagcccgtaacactgacacgcttcg
gtaaggatatgccaggggcaatggcggaatacggcagggagtatatgaaacggaaaacga
agcatggcttgcgttcaaacgtgatactgacagaggattcagaagactggatgccctcat
gtgcatcggtcacaaatgacgatggcaaaaattaaacttatggaataactgttcatcact
gttcaccctgtcataaatatcttttatatcagtatattatatggtgaacagttatttatg
aactgttcaccaaactattcactgttcacctttttgattgtttattgagcttcaagggtg
aacagtggtgaacagttggtgaatagtttttgtgaaactgttcaccccttaacattatga
attaaaagataaaatatcaaaaggtgaacaggtgaagggttgaaacgcaaaaattttaat
ttactgctgtgagataaagcctatgacagcgaagcacacaaaaaaatcacaatcgcacgc
ccttgatttgacggaacactggttaagggtgtcgataaaaatcatcgaccgcaacgccgg
ggaaggatatgcgaaagcacatcccgaactggttagcgcattcatgacaacggcagctgc
aaactttgccacgctgacagaacgggagattgccgaagcggaacaggtaacaacc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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Key
Link Explains Key		 Value


  Protein Families

No protein families found

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