The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|754026.3.peg.1896: Staphylococcus aureus subsp. aureus MRSA177

This feature in The SEED Viewer

NCBI Taxonomy Id: 754026

Current Assignment: FmhA protein of FemAB family
Translate Function Assignments



Context on contig AECP01000046 from base 16853 to 27871 (11019 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1891 16853 17539 687 +       1: 2   Phosphoglycerate mutase (EC 5.4.2.11) locus|HMPREF9529_02001, protein_id|EFW34310.1, gi|320142501, InterPro:IPR005952, InterPro:IPR013078
1892 17971 19410 1440 + 431         FIG01107989: hypothetical protein locus|HMPREF9529_02002, protein_id|EFW34311.1, gi|320142502, InterPro:IPR004638, InterPro:IPR011701
1893 19531 20310 780 + 120         L-Cystine ABC transporter, periplasmic cystine-binding protein TcyA locus|HMPREF9529_02003, protein_id|EFW34312.1, gi|320142503, InterPro:IPR001638
1894 20291 21010 720 + -20         amino acid ABC transporter, permease protein locus|HMPREF9529_02004, protein_id|EFW34313.1, gi|320142504, InterPro:IPR000515, InterPro:IPR010065
1895 21007 21738 732 + -4         L-cystine ABC transporter, ATP-binding protein TcyC locus|HMPREF9529_02005, protein_id|EFW34314.1, gi|320142505, InterPro:IPR003439
1896 23085 21835 1251 - 96     1: 1   FmhA protein of FemAB family locus|HMPREF9529_02006, protein_id|EFW34315.1, gi|320142506, InterPro:IPR003447
1897 23340 23699 360 + 254         FIG01108076: hypothetical protein locus|HMPREF9529_02007, protein_id|EFW34316.1, gi|320142507
1898 23718 24317 600 + 18         Protein-disulfide isomerase, related to DsbA locus|HMPREF9529_02008, protein_id|EFW34317.1, gi|320142508
1899 24590 24841 252 + 272         Antitoxin DinJ (binds YafQ toxin) locus|HMPREF9529_02009, protein_id|EFW34318.1, gi|320142509, InterPro:IPR003756, InterPro:IPR006442
1900 24916 25107 192 + 74         FIG01108752: hypothetical protein locus|HMPREF9529_02010, protein_id|EFW34319.1, gi|320142510, InterPro:IPR009614
1901 25402 26952 1551 + 294         Zinc ABC transporter, substrate-binding AdcA / Metal-binding protein ZinT locus|HMPREF9529_02011, protein_id|EFW34320.1, gi|320142511, InterPro:IPR006127, InterPro:IPR015304
1902 27138 27605 468 + 185         Probable glutathione S-transferase-related transmembrane protein (EC 2.5.1.18) locus|HMPREF9529_02012, protein_id|EFW34321.1, gi|320142512, InterPro:IPR013538
1903 27689 27871 183 + 83         FIG01107855: hypothetical protein locus|HMPREF9529_02013, protein_id|EFW34322.1, gi|320142513

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

Subsystem Curator Role
Methicillin_resistant_Staphylococcus_aureus_-MRSA Saif_Nehal_user FmhA protein of FemAB family


  Protein Sequence

>fig|754026.3.peg.1896 FmhA protein of FemAB family
MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEA
RTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKHNCLYVLVDPYLIENLRNADGE
IVKSYDNRAFVRTMDKLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRR
NIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLA
YIDLNEYLKTLQLKQQQLTAELSGVEEALEESPNSKKNKTKRTQLEQQLNSNKRKIDNTI
EQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRY
NFYGITGDFSESSEDYGVQQFKKGFNAHVEEYIGDFIKPIKPLLYKVQTYLNHKRR

MD5 = d9ceef375fbfb7fe9252fa63ed890429


  DNA Sequence

>fig|754026.3.peg.1896 FmhA protein of FemAB family
atgaactttgtaacgttgacttcggatgagttcaatgcgtttacaacaaagcatttttca
cattacacacaatcagctattcattacaatcatagagttgatttaaaaggcgatgtgcat
cttgtaggggttaaagatgacaatggtcaagtgattgcaggatgcttattgacagaagca
cgcacacttaaatttttcaaatatttttatacacatcgcgggccagtgatggattataca
aatcaatcattagtagcatttttctttaaagcattaacgtcatatttaaagaaacacaat
tgtttatatgtccttgtagatccatatttaattgaaaatttacgcaatgcagacggtgaa
attgttaaatcttatgataaccgagcatttgttagaacaatggataaattaggttataaa
caccaaggtttccctgtaggttatgattcaatgagccaaatccgttggctgtcagtgtta
gatttaaaagataagactgaagaccaacttttaaaagaaatggattatcaaacgagacgt
aatattaaaaaaacatatgatattggtgtcaaaactaaaacgttaacgattgatgaaacg
caaacttttttcgacttattccatatggctgaggaaaagcacggtttcaaattccgtgag
ttaccatactttgaagaaatgcaaaagttatacgatgaccacgccatgttaaagttggcg
tatattgatttaaacgagtatttaaaaacgttacaattaaagcaacaacaattaacagct
gaactctcaggtgttgaagaagcattggaagaaagtcctaattcaaagaaaaataaaacg
aaacgcacacagctagaacaacagctaaatagcaataagcgtaaaatcgacaatacaata
gaacaaattgaacaagatggtgcagtcttaaacttagcttctgctttatttatctacaat
gagcatgaagtttattacttatctagtggttcaaaccctaaatataatgcttatatgggt
gcctaccatttgcagtgggaaatgattaagtttgctaaagcgcatcatattgatcgctat
aatttttatggtattaccggtgacttttcagagtcatcagaagactatggcgtccaacaa
ttcaaaaaaggttttaacgcacatgtagaagagtatatcggtgactttattaagcctatc
aaaccattactatataaggtacaaacgtacttaaatcataaacgtcgttaa


  DNA with Flanking Sequence

>fig|754026.3.peg.1896 FmhA protein of FemAB family
atgcacttcatcattactcaaaggtttataagctaaaatgataattttatccttatcata
gacataaatattagcatctttgcgttcaaaatgatcaacacgatcaccgttgcctttttt
ggcaagttgttcttgtttttgattttgaattttaactgcttcatctatttctttcacata
tttatcattaccacatcctgatataaagactagtaataataataccgtcgccacaaatcg
cttcaatgctcccactcctactatcaacttccaactaactttcaatataattaatactat
acaccgtcaaacattaatgcgctacaactactaccaatgcatttaatataaatatccaaa
gaaataacagttatgtatagtcaaagaaaaatatatttcattttctatgtgtatttgtaa
tcagtttttgataaaataaaaaaatagcattattaataaattcaaaaattatagttcaat
tcagagagggatgggataaaatgaactttgtaacgttgacttcggatgagttcaatgcgt
ttacaacaaagcatttttcacattacacacaatcagctattcattacaatcatagagttg
atttaaaaggcgatgtgcatcttgtaggggttaaagatgacaatggtcaagtgattgcag
gatgcttattgacagaagcacgcacacttaaatttttcaaatatttttatacacatcgcg
ggccagtgatggattatacaaatcaatcattagtagcatttttctttaaagcattaacgt
catatttaaagaaacacaattgtttatatgtccttgtagatccatatttaattgaaaatt
tacgcaatgcagacggtgaaattgttaaatcttatgataaccgagcatttgttagaacaa
tggataaattaggttataaacaccaaggtttccctgtaggttatgattcaatgagccaaa
tccgttggctgtcagtgttagatttaaaagataagactgaagaccaacttttaaaagaaa
tggattatcaaacgagacgtaatattaaaaaaacatatgatattggtgtcaaaactaaaa
cgttaacgattgatgaaacgcaaacttttttcgacttattccatatggctgaggaaaagc
acggtttcaaattccgtgagttaccatactttgaagaaatgcaaaagttatacgatgacc
acgccatgttaaagttggcgtatattgatttaaacgagtatttaaaaacgttacaattaa
agcaacaacaattaacagctgaactctcaggtgttgaagaagcattggaagaaagtccta
attcaaagaaaaataaaacgaaacgcacacagctagaacaacagctaaatagcaataagc
gtaaaatcgacaatacaatagaacaaattgaacaagatggtgcagtcttaaacttagctt
ctgctttatttatctacaatgagcatgaagtttattacttatctagtggttcaaacccta
aatataatgcttatatgggtgcctaccatttgcagtgggaaatgattaagtttgctaaag
cgcatcatattgatcgctataatttttatggtattaccggtgacttttcagagtcatcag
aagactatggcgtccaacaattcaaaaaaggttttaacgcacatgtagaagagtatatcg
gtgactttattaagcctatcaaaccattactatataaggtacaaacgtacttaaatcata
aacgtcgttaaaatatcgctccaagattatgacaacataacaaagaaccacgcatcatgt
atatggcttcatcgccatactaaaacatgatacgtggttctatttgattattcttcattt
ataacatttaagaaacgtcttaattcttctgttttcggacgattgaacatctcttctgga
gccccttgttctccgatcatgccttcatgaataaatacaatgttattagatacttcttta
gcaaaacgcatttcatgtgtcacaatgaccattgtcatgccttcattagccaaatcttta
ataacctttaaaacatcattcacaagttcaggatcaagtgcagatgttggttcatcaaac
aacatcactttagggttcattgctagtgctcttgcaatagcaacacgttgttgttgacca
cctgataatgcatgtggacgttgatctttgacatgtgttaaaccaactttctcaagtaac
tcaagtgatttcccacgtgcctcatcctttt


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search