The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|754026.3.peg.1893: Staphylococcus aureus subsp. aureus MRSA177

This feature in The SEED Viewer

NCBI Taxonomy Id: 754026

Current Assignment: L-Cystine ABC transporter, periplasmic cystine-binding protein TcyA
Translate Function Assignments



Context on contig AECP01000046 from base 13598 to 25107 (11510 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1889 14908 13598 1311 -           IgG-binding protein SBI locus|HMPREF9529_01999, protein_id|EFW34308.1, gi|320142499, InterPro:IPR003132
1890 15660 16526 867 + 751     1: 2 dlit(30808698)
dlit(19226325)
Cation diffusion facilitator MntE locus|HMPREF9529_02000, protein_id|EFW34309.1, gi|320142500, InterPro:IPR002524
1891 16853 17539 687 + 326     1: 3   Phosphoglycerate mutase (EC 5.4.2.11) locus|HMPREF9529_02001, protein_id|EFW34310.1, gi|320142501, InterPro:IPR005952, InterPro:IPR013078
1892 17971 19410 1440 + 431         FIG01107989: hypothetical protein locus|HMPREF9529_02002, protein_id|EFW34311.1, gi|320142502, InterPro:IPR004638, InterPro:IPR011701
1893 19531 20310 780 + 120         L-Cystine ABC transporter, periplasmic cystine-binding protein TcyA locus|HMPREF9529_02003, protein_id|EFW34312.1, gi|320142503, InterPro:IPR001638
1894 20291 21010 720 + -20         amino acid ABC transporter, permease protein locus|HMPREF9529_02004, protein_id|EFW34313.1, gi|320142504, InterPro:IPR000515, InterPro:IPR010065
1895 21007 21738 732 + -4         L-cystine ABC transporter, ATP-binding protein TcyC locus|HMPREF9529_02005, protein_id|EFW34314.1, gi|320142505, InterPro:IPR003439
1896 23085 21835 1251 - 96     1: 1   FmhA protein of FemAB family locus|HMPREF9529_02006, protein_id|EFW34315.1, gi|320142506, InterPro:IPR003447
1897 23340 23699 360 + 254         FIG01108076: hypothetical protein locus|HMPREF9529_02007, protein_id|EFW34316.1, gi|320142507
1898 23718 24317 600 + 18         Protein-disulfide isomerase, related to DsbA locus|HMPREF9529_02008, protein_id|EFW34317.1, gi|320142508
1899 24590 24841 252 + 272         Antitoxin DinJ (binds YafQ toxin) locus|HMPREF9529_02009, protein_id|EFW34318.1, gi|320142509, InterPro:IPR003756, InterPro:IPR006442
1900 24916 25107 192 + 74         FIG01108752: hypothetical protein locus|HMPREF9529_02010, protein_id|EFW34319.1, gi|320142510, InterPro:IPR009614

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|754026.3.peg.1893 L-Cystine ABC transporter, periplasmic cystine-binding protein TcyA
MKRLLFVMIAFVFILAACGNNSSKDKEASKDSKTINVGTEGTYAPFSFHDKDGKLTGYDI
DVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSS
AVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRV
DGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAFSKKADDETVQKFNDGLKKIEEN
GELAKIGKKWFGQDVSKSK

MD5 = 666837dbe7c757f98a97dcf55c333bb5


  DNA Sequence

>fig|754026.3.peg.1893 L-Cystine ABC transporter, periplasmic cystine-binding protein TcyA
atgaaaagacttttatttgtgatgatagctttcgttttcatattggctgcatgcggaaac
aattcgtcgaaagacaaggaagctagtaaagatagcaagacaattaatgttgggactgag
gggacttatgcaccatttagtttccacgataaagatggtaaattaactggttacgatatt
gatgttattaaagcagtggctaaagaagaaggtttaaaacttaaatttaatgaaacttct
tgggattctatgtttgcaggtttagacgcagggcgttttgatgtaatcgcgaaccaagta
ggtattaatcctgatagagaaaagaaatataaattttctaagccttacacattctcaagt
gctgttttagttattcgtgaaaatgaaaaagatattaaagattttgatgatgttaaaggt
aagaagttagcacaaacattcacatctaattatggtaaattagctaaggataaaggtgct
gatattacaaaagttgatggctttaaccaatcaatggatttattattgtctaagcgtgtt
gatggtacatttaatgatagtctgtcatacttggattataaaaaacaaaaacctaatgct
aagatcaaagcaatcaaaggtaatgctgaacaaagtagatctgcatttgcattttctaaa
aaagcagatgatgaaacagttcaaaaattcaatgatggcttgaaaaaaatcgaggaaaac
ggtgaattagctaaaataggtaagaaatggtttggtcaagatgtttctaaatctaaatag


  DNA with Flanking Sequence

>fig|754026.3.peg.1893 L-Cystine ABC transporter, periplasmic cystine-binding protein TcyA
tgttggcaacagtttatgcgattcgaatggttggtatcgcgttaggattaattccagtaa
tgacccatacgatgaatcaattaaagccagaaatgaatgcacatggttcatctatgacaa
acacagtacaacaaattgctggttctatcggaacagctgcattaattactattttatccc
atgcaagcaaaaacttttctccaactatgtcagactataatggcatgaacaaaattgata
tgatgaatcaaattaaagttgatacgatgttgcatggttatcacgctggatttttatttg
cattattgattacagttgttagtttcttttgttcatttatgttacaaggtaagaaaaaag
aagttgattctcgtcaataaatataagttgctagctatataaagctttttagcaaaagtt
caacatattgacttatccggcatttcagattaaaatatttttattccgattagaataata
agaataaggagatatattctatgaaaagacttttatttgtgatgatagctttcgttttca
tattggctgcatgcggaaacaattcgtcgaaagacaaggaagctagtaaagatagcaaga
caattaatgttgggactgaggggacttatgcaccatttagtttccacgataaagatggta
aattaactggttacgatattgatgttattaaagcagtggctaaagaagaaggtttaaaac
ttaaatttaatgaaacttcttgggattctatgtttgcaggtttagacgcagggcgttttg
atgtaatcgcgaaccaagtaggtattaatcctgatagagaaaagaaatataaattttcta
agccttacacattctcaagtgctgttttagttattcgtgaaaatgaaaaagatattaaag
attttgatgatgttaaaggtaagaagttagcacaaacattcacatctaattatggtaaat
tagctaaggataaaggtgctgatattacaaaagttgatggctttaaccaatcaatggatt
tattattgtctaagcgtgttgatggtacatttaatgatagtctgtcatacttggattata
aaaaacaaaaacctaatgctaagatcaaagcaatcaaaggtaatgctgaacaaagtagat
ctgcatttgcattttctaaaaaagcagatgatgaaacagttcaaaaattcaatgatggct
tgaaaaaaatcgaggaaaacggtgaattagctaaaataggtaagaaatggtttggtcaag
atgtttctaaatctaaatagcgaacaacaacatgcgctagatgctgcaaaacaagctttc
ggacctatgctagaaggtttggtcaaatattcaattcctattacattagttacatttgtt
ttaggattgattattgcattatttacagcattaatgcgaatttcaacgagtaaaatttta
agaagtatttcacgtgtctatgtatctattattcgaggaacaccaatgatagtacaacta
tttatcatattttatggtattccagaattaggtagattattaacaaatgacgctgacaac
caatggacattggcacctgtagtggctgctattattggtttatcattaaatgtaggtgcg
tatgcttcggaaattattcgtggcggtattatttctataccgaaaggacaaacagaagct
gcatattccatcggtatgacgtatggtcaaacgatacaacgtatcattttaccgcaggca
attcgagtgtcgattcctgcactaggtaatacatttttaa


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


Tool Description
General Tools
Psi-Blast NCBI's psi-blast is used to locate distant similarities
Transmembrane Predictions
TMpred Tool for Predicting Transmembrane regions
TMHMM Prediction of transmembrane helices in proteins
Protein Signals for Gram negative bacteria
Gram negative PSORT Prediction of protein localization sites
Gram negative SignalP Predicts the presence and location of signal peptide cleavage sites
Protein Signals for Gram positive bacteria
Gram positive PSORT Prediction of protein localization sites
Gram positive SignalP Predicts the presence and location of signal peptide cleavage sites
Other useful tools
LipoP Prediction of lipoproteins and signal peptides in Gram negative bacteria
Radar Rapid Automatic Detection and Alignment of Repeats in protein sequences
PPSearch Search for protein motifs against all patterns stored in the PROSITE pattern database
Gram negative CELLO Subcellular localization predictor at National Chiao Tung University
Gram positive CELLO Subcellular localization predictor at National Chiao Tung University
ProDom A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases
PDB An Information Portal to Biological Macromolecular Structures
For Specific Organisms
RNAFold The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences.

< Hide tool descriptions


FIG search