The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on aspen.cels.anl.gov
 The SEED


FIG search

Protein fig|682148.3.peg.1126: Gardnerella vaginalis 5-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 682148

Current Assignment: DNA helicase, phage-associated
Translate Function Assignments


Context on contig NZ_ADAN01000092 from base 3126 to 16192 (13067 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
1121 3126 5102 1977 +   8     FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7) locus|GV51_1084, protein_id|ZP_06977385.1, gi|298253796
1122 5200 5991 792 + 97         Phage antirepressor protein locus|GV51_1085, protein_id|ZP_06977386.1, gi|298253797
1123 6242 6358 117 + 250         hypothetical protein locus|GV51_1086, protein_id|ZP_06977387.1, gi|298253798
1124 6351 8678 2328 + -8 5     DNA primase, phage associated locus|GV51_1087, protein_id|ZP_06977388.1, gi|298253799
1125 9095 9244 150 + 416         FIG00672347: hypothetical protein locus|GV51_1088, protein_id|ZP_06977389.1, gi|298253800
1126 9487 10926 1440 + 242       DNA helicase, phage-associated locus|GV51_1090, protein_id|ZP_06977391.1, gi|298253802
1127 11105 11314 210 + 178         FIG00672546: hypothetical protein locus|GV51_1091, protein_id|ZP_06977392.1, gi|298253803
1128 11458 13779 2322 + 143         FIG00672354: hypothetical protein locus|GV51_1092, protein_id|ZP_06977393.1, gi|298253804
1129 14541 14684 144 + 761         HNH endonuclease domain protein locus|GV51_1095, protein_id|ZP_06977396.1, gi|298253807
1130 14845 15396 552 + 160 4     hypothetical protein locus|GV51_1096, protein_id|ZP_06977397.1, gi|298253808
1131 15407 16192 786 + 10         FIG00632709: hypothetical protein locus|GV51_1097, protein_id|ZP_06977398.1, gi|298253809

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|682148.3.peg.1126 DNA helicase, phage-associated
MRYKPHEYQKYATDFIITHPVSAVLLEMGLGKSVISLTAINNLMLDSFDVSRTLVIAPLR
VANATWPLELEKWEHLKHLTYSVVTGSEKERIQALKTPAHVYIINRENVEWLIMKSGLPF
NFDMVVIDELSSFKSYQAKRFKALLKARPKVKRIVGLTGTPSSNGLMDLWAEFRLLDMGQ
RLGRYITYYRQNFFNPDKRNQHMIFSYKPKDGAESLIYKQIADITISMKSKDYLKMPACV
INEVKVELSGKERKLYDELKADMVVSLEGKEIDAINAASLSNKLLQMAGGAVYNEKKESV
HIHDRKLDALEDLIEAANGKPVLVAYWFKHDLERIKKRFNVREIKTSADIADWNAGMIPV
ALIHPASAGHGLNLQAGGSTLIWFSLTWSLELYQQTNARLNRQGQTSTVVIHHIITKNTI
DEDVMRALSMKAKVQDALIESVKARLSINEVRERGSRENLPQNGGKNEQKRILTASLSS

MD5 = bf13e4565caf1b5d93fcfe7b2be6f61d


  DNA Sequence

>fig|682148.3.peg.1126 DNA helicase, phage-associated
atgcgatacaagccacacgagtatcaaaagtatgcgactgattttattatcacacacccg
gtttcagcggttttgcttgaaatgggacttggtaagagtgttataagtcttacagcgatt
aacaacctgatgcttgactcgtttgatgtttccagaactcttgttatcgctcctcttagg
gttgcgaacgctacgtggcctttagagttagaaaagtgggagcatttaaaacacttgact
tattctgttgtgacgggcagtgagaaggagcggattcaagcactaaaaacgcctgctcac
gtttatattattaaccgtgaaaacgtggagtggctgataatgaaaagcggcctgccgttt
aatttcgacatggttgtgatagatgagctttcaagttttaaatcatatcaggcgaaacgt
ttcaaagcattactgaaggctagaccgaaagttaaaaggattgttggtcttacaggaact
ccttcttctaacgggctaatggatttgtgggctgagtttaggctgcttgatatgggtcaa
aggctaggccgctatattacgtattatcggcagaacttttttaatcctgataagcgtaac
cagcacatgattttttcctacaagcctaaagatggtgctgagagtttaatctataagcag
atagctgatattacgatttcgatgaagtcaaaagactatttgaaaatgccagcgtgtgtg
ataaacgaggtgaaagtagagttatccggtaaggagcgaaaactctacgatgagcttaaa
gcagatatggtggtgtcattggagggtaaagagattgatgcgattaacgcagcgtctctt
tcaaataagcttcttcaaatggcaggcggcgcggtttataacgagaaaaaagaaagcgtt
catattcatgatcgtaagctggacgcgttagaggatttaatcgaggctgctaacggtaaa
ccggtgcttgtagcttactggtttaagcatgatcttgagcggattaagaaacgttttaac
gtgcgtgagattaaaacgagtgctgatattgctgactggaatgccggcatgattcctgta
gcgttgattcacccggcttctgcaggtcatggtcttaacctacaggctggcggctctact
cttatctggttttccctgacttggagtttggaactttaccagcagacgaacgccaggctt
aaccgtcagggtcaaaccagcacggttgtaatccatcacattatcactaagaacacgatt
gatgaggatgtgatgagggctttaagcatgaaggctaaagtgcaggatgctttaatcgag
tcggttaaggcaagactatcaattaacgaagtgagggaaaggggttctagagagaactta
cctcaaaatggaggtaagaatgaacaaaaaagaatacttacggcaagcctatcttcttga


  DNA with Flanking Sequence

>fig|682148.3.peg.1126 DNA helicase, phage-associated
gcaaggcttatcacagatacaggctctatcctcttaaaaacgcagcaggataaattgatg
agagccatggataaagtccgtcagttatgttcgctagcagaagaaaacatgtttaaagac
tatcccgatttaagcaaagactatattgacgtgttttatggcgatgttgctaatgagccg
agaaacgaagtggataagaaaatcattgagatggcaaaagaggtatctgatgggcttttt
acgagaaaaggaaactgagcgaaaactcgtccgtgaagtcaaagcaatgagaggactttg
tttaaaacttacgagtccttccgttgacgggcttccagacaggctggttttacttcatgg
gggcaagattggttttgtggagcttaaagcaccaggtaaaaagcctagagttttacaggt
gaaacggatgaaggatttacaggatttaggttttaaggttttcgtggttgatgacaagag
tcagattggaggtgtgattgatgcgatacaagccacacgagtatcaaaagtatgcgactg
attttattatcacacacccggtttcagcggttttgcttgaaatgggacttggtaagagtg
ttataagtcttacagcgattaacaacctgatgcttgactcgtttgatgtttccagaactc
ttgttatcgctcctcttagggttgcgaacgctacgtggcctttagagttagaaaagtggg
agcatttaaaacacttgacttattctgttgtgacgggcagtgagaaggagcggattcaag
cactaaaaacgcctgctcacgtttatattattaaccgtgaaaacgtggagtggctgataa
tgaaaagcggcctgccgtttaatttcgacatggttgtgatagatgagctttcaagtttta
aatcatatcaggcgaaacgtttcaaagcattactgaaggctagaccgaaagttaaaagga
ttgttggtcttacaggaactccttcttctaacgggctaatggatttgtgggctgagttta
ggctgcttgatatgggtcaaaggctaggccgctatattacgtattatcggcagaactttt
ttaatcctgataagcgtaaccagcacatgattttttcctacaagcctaaagatggtgctg
agagtttaatctataagcagatagctgatattacgatttcgatgaagtcaaaagactatt
tgaaaatgccagcgtgtgtgataaacgaggtgaaagtagagttatccggtaaggagcgaa
aactctacgatgagcttaaagcagatatggtggtgtcattggagggtaaagagattgatg
cgattaacgcagcgtctctttcaaataagcttcttcaaatggcaggcggcgcggtttata
acgagaaaaaagaaagcgttcatattcatgatcgtaagctggacgcgttagaggatttaa
tcgaggctgctaacggtaaaccggtgcttgtagcttactggtttaagcatgatcttgagc
ggattaagaaacgttttaacgtgcgtgagattaaaacgagtgctgatattgctgactgga
atgccggcatgattcctgtagcgttgattcacccggcttctgcaggtcatggtcttaacc
tacaggctggcggctctactcttatctggttttccctgacttggagtttggaactttacc
agcagacgaacgccaggcttaaccgtcagggtcaaaccagcacggttgtaatccatcaca
ttatcactaagaacacgattgatgaggatgtgatgagggctttaagcatgaaggctaaag
tgcaggatgctttaatcgagtcggttaaggcaagactatcaattaacgaagtgagggaaa
ggggttctagagagaacttacctcaaaatggaggtaagaatgaacaaaaaagaatactta
cggcaagcctatcttcttgataagcggattaaggctgatatggatgaggtggtaagactg
cgtgagcttgctacaagtgtttcttcattaagatacgacagagagtatgtgcagacgact
cgaagtatagaagctccgtttgtgaaagctcttataagggttatggatttagaagccaag
attaacatggagattacgatgcttatcagtttgaaagagcagattttggatgtgatttct
aaacttgaaagcgtggatgagcagatgattttacgctaccgctacatgagtaacatgacg
tgggaggatattggtaacgaactccatgctagcagaatgacgattataagagggcatggg
aaagcgttagagcacatagttttaccagataatctaatccaaatctgaaaaaatggtacg
gtttggtacgctctgatacgagatgttacagccttctatatggtagtatatagttagcaa
aaactgtaaatactaagccttgaaagagtaatctttcagg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function
8 fig|682148.3.peg.1121 FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7)
5 fig|682148.3.peg.1124 DNA primase, phage associated
4 fig|682148.3.peg.1130 hypothetical protein


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options

|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions
FIG search