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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


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Protein fig|682148.3.peg.1125: Gardnerella vaginalis 5-1

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NCBI Taxonomy Id: 682148

Current Assignment: FIG00672347: hypothetical protein
Translate Function Assignments



Context on contig NZ_ADAN01000092 from base 3126 to 13779 (10654 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1121 3126 5102 1977 +           FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7) locus|GV51_1084, protein_id|ZP_06977385.1, gi|298253796
1122 5200 5991 792 + 97         Phage antirepressor protein locus|GV51_1085, protein_id|ZP_06977386.1, gi|298253797
1123 6242 6358 117 + 250         hypothetical protein locus|GV51_1086, protein_id|ZP_06977387.1, gi|298253798
1124 6351 8678 2328 + -8         DNA primase, phage associated locus|GV51_1087, protein_id|ZP_06977388.1, gi|298253799
1125 9095 9244 150 + 416         FIG00672347: hypothetical protein locus|GV51_1088, protein_id|ZP_06977389.1, gi|298253800
1126 9487 10926 1440 + 242         DNA helicase, phage-associated locus|GV51_1090, protein_id|ZP_06977391.1, gi|298253802
1127 11105 11314 210 + 178         FIG00672546: hypothetical protein locus|GV51_1091, protein_id|ZP_06977392.1, gi|298253803
1128 11458 13779 2322 + 143         FIG00672354: hypothetical protein locus|GV51_1092, protein_id|ZP_06977393.1, gi|298253804

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  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|682148.3.peg.1125 FIG00672347: hypothetical protein
MFKDYPDLSKDYIDVFYGDVANEPRNEVDKKIIEMAKEVSDGLFTRKGN

MD5 = 912c3bfa16e917f06d1e99bf2fc08c51


  DNA Sequence

>fig|682148.3.peg.1125 FIG00672347: hypothetical protein
atgtttaaagactatcccgatttaagcaaagactatattgacgtgttttatggcgatgtt
gctaatgagccgagaaacgaagtggataagaaaatcattgagatggcaaaagaggtatct
gatgggctttttacgagaaaaggaaactga


  DNA with Flanking Sequence

>fig|682148.3.peg.1125 FIG00672347: hypothetical protein
aaacgtttgaaagactggcaaagatctgacaatcgtagaaccataccaatctatggaagg
caaagaatttataccagaatctgagtggacaagcggagaaaacaggacaactgaatgtag
cttgtcctgactttgtcacttgtcccgccaataacaacaggctttggacgaacagggacg
gacaacacatgaaaatctatattaaataaaatctttatttattacttatagcgtacacgt
aacacgtgtattcgcgcgtaaagggatttttagccatttgtccgtccttgtcccgataga
aaggataaaaaattatgagaagtaaacaagcaagaacaatggaaagatacatgaaagcag
gagctgaaatgagactgcttaagagccttagcgcaaggcttatcacagatacaggctcta
tcctcttaaaaacgcagcaggataaattgatgagagccatggataaagtccgtcagttat
gttcgctagcagaagaaaacatgtttaaagactatcccgatttaagcaaagactatattg
acgtgttttatggcgatgttgctaatgagccgagaaacgaagtggataagaaaatcattg
agatggcaaaagaggtatctgatgggctttttacgagaaaaggaaactgagcgaaaactc
gtccgtgaagtcaaagcaatgagaggactttgtttaaaacttacgagtccttccgttgac
gggcttccagacaggctggttttacttcatgggggcaagattggttttgtggagcttaaa
gcaccaggtaaaaagcctagagttttacaggtgaaacggatgaaggatttacaggattta
ggttttaaggttttcgtggttgatgacaagagtcagattggaggtgtgattgatgcgata
caagccacacgagtatcaaaagtatgcgactgattttattatcacacacccggtttcagc
ggttttgcttgaaatgggacttggtaagagtgttataagtcttacagcgattaacaacct
gatgcttgactcgtttgatgtttccagaactcttgttatcgctcctcttagggttgcgaa
cgctacgtggcctttagagttagaaaagtgggagcatttaaaacacttgacttattctgt
tgtgacgggc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

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