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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|682148.3.peg.1124: Gardnerella vaginalis 5-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 682148

Current Assignment: DNA primase, phage associated
Translate Function Assignments



Context on contig NZ_ADAN01000092 from base 1180 to 13779 (12600 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1119 1180 2346 1167 +   5     Phage protein locus|GV51_1081, protein_id|ZP_06977382.1, gi|298253793
1120 2351 2899 549 + 4 4     Phage protein locus|GV51_1082, protein_id|ZP_06977383.1, gi|298253794
1121 3126 5102 1977 + 226 7     FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7) locus|GV51_1084, protein_id|ZP_06977385.1, gi|298253796
1122 5200 5991 792 + 97         Phage antirepressor protein locus|GV51_1085, protein_id|ZP_06977386.1, gi|298253797
1123 6242 6358 117 + 250         hypothetical protein locus|GV51_1086, protein_id|ZP_06977387.1, gi|298253798
1124 6351 8678 2328 + -8       DNA primase, phage associated locus|GV51_1087, protein_id|ZP_06977388.1, gi|298253799
1125 9095 9244 150 + 416         FIG00672347: hypothetical protein locus|GV51_1088, protein_id|ZP_06977389.1, gi|298253800
1126 9487 10926 1440 + 242 11     DNA helicase, phage-associated locus|GV51_1090, protein_id|ZP_06977391.1, gi|298253802
1127 11105 11314 210 + 178         FIG00672546: hypothetical protein locus|GV51_1091, protein_id|ZP_06977392.1, gi|298253803
1128 11458 13779 2322 + 143         FIG00672354: hypothetical protein locus|GV51_1092, protein_id|ZP_06977393.1, gi|298253804

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|682148.3.peg.1124 DNA primase, phage associated
MRSLAIAYGNNRQAKTWVNKTITYGELKDRLKVTIRTSESAEEYAKMKKTDRDLAKDHGG
FVAGALAYGRRKVDSVEFRSMLALDGDHVAKDFIVLYESVAPYTSFLYTTHSHTPDNPRV
RIVFPLTRNVTPDEFVAVSRYLADMLGIDQFDECSYLPNQLMYWPSTPQNGVYEYKEVEK
DWLNPDDILSAHPEWTDPTRLPTSSRESKANQVQKQKVQDPLAKNGVVGLFNRVFNPVTL
ALEKFLSDIYEPTDNENRWHLIASHSMAGVEIIEDKFVYSHHAKDPAYLKLCNAFDIVRT
HKFASLDEKESFKKMSEFAMSLDEVKLQAANERLSEAEDDFVDSEDWKKKLRYTSKGAVL
ENSLYNAKLIIKHDPLLKGIVFNQLADGLEIKGDVPWQHPAKFWRDADDAQLICYVDDHY
GSFSQRNYDIAVTKVSDDRSYHPIRRYFESLPQWDGVKRVDTLFIDYLGAEDNAYIRAVC
RKTLCAAYMRIYHPGIKFDYLPVFNGAQGIGKSTFIANLGMEWFSDSLTLSDMNDKTAAE
KLQGYWIHEISELAGMKKADLDKVKAFVSRRDDKYRASFGKRVSPHPRQCVFFGTTNSEN
GYLRDVTGNRRFWNVKVSGNGKYKPWEMTRELVDQIWAETMVISKAGEELFLDASLEAFA
QEEQREAMQQDDREGIVREYLNMLLPDTWDEMDIYRRRDYFRDMEDPTRPKGTVKRMEVS
NIEIWCECFGKAKEDIKPIDSYAISAIMKRLKDWQRSDNRRTIPIYGRQRIYTRI

MD5 = 8ef9680a92fbb06ecd132b3bf51393ee


  DNA Sequence

>fig|682148.3.peg.1124 DNA primase, phage associated
atgcgtagtttagctatcgcttacggtaacaacaggcaggcaaagacatgggtgaataag
accatcacctatggtgagctgaaagaccgtcttaaagtgacgattcgcacctcagagtca
gcggaagagtatgcaaaaatgaagaaaacggatcgtgatcttgcaaaagaccacggtggt
ttcgttgcaggagcgttggcttacggtagacgaaaagtcgacagcgttgaatttcgctcc
atgctcgccttagatggggatcatgttgctaaagactttattgtactctacgagagtgtt
gcgccttacacgtcttttctgtacacgacacacagccacacgcctgataatccgagggtg
agaattgtttttcctttaacaaggaatgtaacacctgacgagtttgtagcagtgtcaagg
tatttagctgacatgctgggtattgaccagtttgatgaatgctcttacttgcctaaccag
ctcatgtactggccgtccacgccacaaaacggcgtgtacgagtataaagaggttgaaaaa
gactggcttaatcctgatgatattttatccgctcaccctgagtggacagatccgaccagg
cttccgacctcgtctcgtgagagtaaagcgaatcaggtgcagaaacagaaagtgcaagat
ccactcgcgaaaaatggtgtggttggattgtttaaccgagtatttaacccagtaactctt
gctttggaaaagtttttaagcgacatatatgagccgacagataatgaaaaccgctggcat
cttatagcctcacacagtatggcaggagttgagattatcgaagacaagttcgtttactct
catcacgctaaagacccggcgtatttaaaactgtgtaacgcttttgatatcgttcgcacg
cacaaattcgctagcttagacgagaaagagtcgtttaagaaaatgagcgagtttgcgatg
agtcttgatgaggtaaaacttcaagcagcaaacgagaggctctcggaagcggaagatgat
tttgttgacagtgaggattggaagaaaaaactacgctatacgtctaaaggcgctgtttta
gaaaactcgctttataatgcgaaactcattattaaacatgatcctttgcttaaaggaatc
gtttttaaccagctggctgatggtcttgaaattaaaggcgatgttccttggcagcatcct
gcgaagttttggagggatgcggacgatgctcagcttatctgctatgttgacgaccattat
ggctcgttctcacagagaaactatgatattgctgtcacgaaagtgtcagatgatagaagt
tatcatccgataagacgctattttgagagtcttcctcaatgggatggtgtgaaacgtgta
gacacgctttttatcgactatcttggtgctgaagacaacgcgtatattcgtgcagtgtgt
agaaaaacactgtgtgcagcatacatgcgtatctaccatcctggtattaaatttgactac
cttcctgtttttaatggtgcgcaaggtatcggcaagtcaacgtttatagcaaaccttggc
atggaatggttttcagacagtctcacgctttcagacatgaacgataagactgcggctgaa
aaactccaaggatattggattcatgaaatcagcgagcttgcgggcatgaaaaaagctgat
cttgataaggtaaaagcttttgtttcaagacgagatgataagtatcgtgcttcttttgga
aaacgtgtctccccacacccgaggcagtgcgtgttcttcggtacaacgaatagtgaaaac
ggttatttaagggatgttacgggtaaccggcgtttttggaatgtgaaagtgtcgggaaac
ggtaagtataagccctgggaaatgacgcgagaactggttgaccaaatatgggcggaaacc
atggttatttccaaggcgggtgaagaactgttccttgatgcgagcttggaggctttcgct
caagaagaacagcgtgaagccatgcagcaagacgaccgtgaaggcattgttagagagtat
cttaacatgcttctacctgatacttgggatgaaatggatatttacaggcggcgggattac
ttccgtgacatggaggatccgacacgtcctaaaggcacggttaaacgcatggaagtatcc
aacattgaaatatggtgcgaatgcttcgggaaagccaaagaagatattaagcctatcgac
agttacgcaatatcggcgattatgaaacgtttgaaagactggcaaagatctgacaatcgt
agaaccataccaatctatggaaggcaaagaatttataccagaatctga


  DNA with Flanking Sequence

>fig|682148.3.peg.1124 DNA primase, phage associated
aatacatacgaggattctaatggtgttacacactcaaaaatgcatacttattggactcag
aaaggcaggcttttcatctatcacctcatgacacaacacggtatctacccgttgattgaa
caggaggctaaagatgagtaagtcttataaaaagcatttagaaacaacaccgaattttaa
gcctatcgtctacatttgtgctccctaccgtggagataaggaaagaaacgttaagcacgc
tattcggtgtgcggcttacgcgtattcacgcggagcaatccctatcactccacacctgct
tttccctttcatggatgatgagaatcaaaagcatagaggggatgcgatgtttatggacat
tatcctcttaggcaagtgcaacgaactatgggtgttcggagaaaaaatcacaggcggcat
gcaagtagaaatcaatttggctgaaaaacgcaggcagccgattaagtattttacggataa
ggatttgggggtgaatgttgatgcgtagtttagctatcgcttacggtaacaacaggcagg
caaagacatgggtgaataagaccatcacctatggtgagctgaaagaccgtcttaaagtga
cgattcgcacctcagagtcagcggaagagtatgcaaaaatgaagaaaacggatcgtgatc
ttgcaaaagaccacggtggtttcgttgcaggagcgttggcttacggtagacgaaaagtcg
acagcgttgaatttcgctccatgctcgccttagatggggatcatgttgctaaagacttta
ttgtactctacgagagtgttgcgccttacacgtcttttctgtacacgacacacagccaca
cgcctgataatccgagggtgagaattgtttttcctttaacaaggaatgtaacacctgacg
agtttgtagcagtgtcaaggtatttagctgacatgctgggtattgaccagtttgatgaat
gctcttacttgcctaaccagctcatgtactggccgtccacgccacaaaacggcgtgtacg
agtataaagaggttgaaaaagactggcttaatcctgatgatattttatccgctcaccctg
agtggacagatccgaccaggcttccgacctcgtctcgtgagagtaaagcgaatcaggtgc
agaaacagaaagtgcaagatccactcgcgaaaaatggtgtggttggattgtttaaccgag
tatttaacccagtaactcttgctttggaaaagtttttaagcgacatatatgagccgacag
ataatgaaaaccgctggcatcttatagcctcacacagtatggcaggagttgagattatcg
aagacaagttcgtttactctcatcacgctaaagacccggcgtatttaaaactgtgtaacg
cttttgatatcgttcgcacgcacaaattcgctagcttagacgagaaagagtcgtttaaga
aaatgagcgagtttgcgatgagtcttgatgaggtaaaacttcaagcagcaaacgagaggc
tctcggaagcggaagatgattttgttgacagtgaggattggaagaaaaaactacgctata
cgtctaaaggcgctgttttagaaaactcgctttataatgcgaaactcattattaaacatg
atcctttgcttaaaggaatcgtttttaaccagctggctgatggtcttgaaattaaaggcg
atgttccttggcagcatcctgcgaagttttggagggatgcggacgatgctcagcttatct
gctatgttgacgaccattatggctcgttctcacagagaaactatgatattgctgtcacga
aagtgtcagatgatagaagttatcatccgataagacgctattttgagagtcttcctcaat
gggatggtgtgaaacgtgtagacacgctttttatcgactatcttggtgctgaagacaacg
cgtatattcgtgcagtgtgtagaaaaacactgtgtgcagcatacatgcgtatctaccatc
ctggtattaaatttgactaccttcctgtttttaatggtgcgcaaggtatcggcaagtcaa
cgtttatagcaaaccttggcatggaatggttttcagacagtctcacgctttcagacatga
acgataagactgcggctgaaaaactccaaggatattggattcatgaaatcagcgagcttg
cgggcatgaaaaaagctgatcttgataaggtaaaagcttttgtttcaagacgagatgata
agtatcgtgcttcttttggaaaacgtgtctccccacacccgaggcagtgcgtgttcttcg
gtacaacgaatagtgaaaacggttatttaagggatgttacgggtaaccggcgtttttgga
atgtgaaagtgtcgggaaacggtaagtataagccctgggaaatgacgcgagaactggttg
accaaatatgggcggaaaccatggttatttccaaggcgggtgaagaactgttccttgatg
cgagcttggaggctttcgctcaagaagaacagcgtgaagccatgcagcaagacgaccgtg
aaggcattgttagagagtatcttaacatgcttctacctgatacttgggatgaaatggata
tttacaggcggcgggattacttccgtgacatggaggatccgacacgtcctaaaggcacgg
ttaaacgcatggaagtatccaacattgaaatatggtgcgaatgcttcgggaaagccaaag
aagatattaagcctatcgacagttacgcaatatcggcgattatgaaacgtttgaaagact
ggcaaagatctgacaatcgtagaaccataccaatctatggaaggcaaagaatttatacca
gaatctgagtggacaagcggagaaaacaggacaactgaatgtagcttgtcctgactttgt
cacttgtcccgccaataacaacaggctttggacgaacagggacggacaacacatgaaaat
ctatattaaataaaatctttatttattacttatagcgtacacgtaacacgtgtattcgcg
cgtaaagggatttttagccatttgtccgtccttgtcccgatagaaaggataaaaaattat
gagaagtaaacaagcaagaacaatggaaagatacatgaaagcaggagctgaaatgagact
gcttaagagccttagcgcaaggcttatcacagatacaggctctatcctcttaaaaacgca
gcaggataaattgatgagagccatggataaagtccgtcagttatgttcgctagcagaaga
aaacatgtttaaagactatcccgatttaagcaaagactatattgacgtgttttatggcga
tgttgctaatgagccgagaaacgaagtg


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
5 fig|682148.3.peg.1119 Phage protein
4 fig|682148.3.peg.1120 Phage protein
7 fig|682148.3.peg.1121 FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7)
11 fig|682148.3.peg.1126 DNA helicase, phage-associated


  Attributes

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  Protein Families

No protein families found

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