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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


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Protein fig|682148.3.peg.1121: Gardnerella vaginalis 5-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 682148

Current Assignment: FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7)
Translate Function Assignments



Context on contig NZ_ADAN01000092 from base 143 to 10926 (10784 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1117 143 622 480 +           hypothetical protein locus|GV51_1079, protein_id|ZP_06977380.1, gi|298253791
1118 915 1223 309 + 292         rRNA biogenesis protein rrp5, putative locus|GV51_1080, protein_id|ZP_06977381.1, gi|298253792
1119 1180 2346 1167 + -44 12     Phage protein locus|GV51_1081, protein_id|ZP_06977382.1, gi|298253793
1120 2351 2899 549 + 4 8     Phage protein locus|GV51_1082, protein_id|ZP_06977383.1, gi|298253794
1121 3126 5102 1977 + 226       FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7) locus|GV51_1084, protein_id|ZP_06977385.1, gi|298253796
1122 5200 5991 792 + 97 4     Phage antirepressor protein locus|GV51_1085, protein_id|ZP_06977386.1, gi|298253797
1123 6242 6358 117 + 250         hypothetical protein locus|GV51_1086, protein_id|ZP_06977387.1, gi|298253798
1124 6351 8678 2328 + -8 11     DNA primase, phage associated locus|GV51_1087, protein_id|ZP_06977388.1, gi|298253799
1125 9095 9244 150 + 416         FIG00672347: hypothetical protein locus|GV51_1088, protein_id|ZP_06977389.1, gi|298253800
1126 9487 10926 1440 + 242 10     DNA helicase, phage-associated locus|GV51_1090, protein_id|ZP_06977391.1, gi|298253802

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|682148.3.peg.1121 FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7)
MENLSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL
SALTDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSAT
LGLPMSLENVGIVLGLDKQKLTEGKNLIKYFCLPCNPTKVNGGRTRNKYFHDKEKWEQFK
SYNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAIKLDLEVKT
HLMSELKRVTGLENPNSVLQMRSWLKKHGLEMESLGKKEVAKELKTVGKELAEVLRLRQQ
LAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNLPQNHLPDLAEARS
LVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGLKFIVADFSAIEARVLAWLAGEKWRM
RVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMGALDMG
LTEDELQPLVDAWRSSNPMVTTLWWDVDRAVKQCVHEHVSVRTHNIVFTYKSGFLIIKLP
SKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILIYAM
QTLKEYRIVAHVHDEAIIETDKSVSVQSVCELMGRTPPWAEGLLLRADGYECEFYKKD

MD5 = 5fe8537585267d00c5ad2ade92cefd9f


  DNA Sequence

>fig|682148.3.peg.1121 FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7)
ttggaaaatttgagtgtggatttggagacgttttcgagtgtaaatcttggtaaatgtggg
gtttacaagtacgcagaatcagaggattttgaaatactgctttttggctacagtgtggac
ggtagtgaagttcaggtcgttgacttagcacaaggtgaaaccatacccgaggttgtgctt
tctgctttaacagatgaaacggtgaccaagtgggcgtttaacgctcagtttgaaagaatc
tgcctatcacgctatttgcgagataaaggcatcaatgttaaccctggtcagacaggaaaa
agtgaaggcttgtttttaaacccaagctcgtggcattgcacaatgatctggtcagccacc
ctggggcttcccatgtcgcttgaaaacgtgggaatagtactgggccttgataagcagaag
ctcactgagggtaagaatcttattaaatacttctgcttaccgtgtaatcctacgaaagta
aacggtggaagaacaagaaacaagtatttccacgataaggaaaagtgggagcagtttaaa
tcgtataacaagcgtgatgtggaagttgagatgagtattcaagaaaagctctcacgcttt
cccgtgccggactttttatggcaggagttttatctcgaccaagagattaacgaccgtggg
ataggaatagattctcttttcgttgagtcagccataaaactcgacttagaggtgaaaacg
catcttatgagtgagcttaagcgtgttacgggtttagaaaacccgaactctgtgttacag
atgcgctcttggcttaaaaagcatggtcttgaaatggagtcgcttggtaaaaaagaagtc
gctaaagagcttaaaacagtgggtaaagagttggcggaagttttacggcttcgtcagcag
cttgctaaatcctcggtgaaaaagtatacggcgatgaaaaacgctgcctgtatggattat
cgggagcgtggcatgtttcgcttctatggggcaaaccgtacaggaaggtttgcgggaagg
cttgtgcaattacaaaacctgccacaaaaccatctgcctgatttggcggaggctagaagt
cttgttaaacaaggaaatgttgaagctttggaaatgctttatgaggatattcctgatact
ttatcccagcttattcgcactgcttttattccacgcacgggattgaagtttattgtcgca
gacttttcagcgatcgaagcgagagtcttggcttggcttgcaggtgaaaaatggcgtatg
cgagtattcgcggaaggtaaagacatttactgctcgtcagcatctcaaatgtttagtgtg
cctgttgaaaagcacggagtaaacgggcacctgcggcagaaaggtaagatagcggagctc
gctcttggatatggcggctctgttggtgcgttaaaagccatgggagcgctcgacatgggt
cttaccgaggatgagctgcagcctcttgttgatgcgtggagatcatctaacccgatggtt
acaacactgtggtgggatgtggacagagcggtaaaacagtgtgtacacgaacacgtatct
gttcgaacacacaatatagtgttcacttacaagagtgggtttcttatcatcaaactgcct
tcgaaaagatgcctttactatgtgaagccacgtgtggaagaaaacaagtatggtggtgaa
tcggtcacatatgagggtgtgggatctactaaaaaatgggagcggctggaaagctacggt
cctaaattcgtagaaaacattacgcaagctatagctcgtgacatcctcatctatgctatg
caaacgctgaaagaatatcgcatcgtcgcgcacgtgcatgatgaagccattatcgaaacc
gataaaagcgtgagtgttcaaagcgtgtgtgagctaatgggaagaacaccaccttgggca
gaaggtttacttcttagagctgacggctacgagtgcgagttttacaaaaaagattaa


  DNA with Flanking Sequence

>fig|682148.3.peg.1121 FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7)
gtataaaggacattactttattaacgcgaactcaaccacggctccgcagattgtagacaa
gcaggtaaaaccaatcatggatcgcagtgaagtgtattcaggctgctatgcgagggtttc
catcaatttttacgcgtttaactctaacggtaataagggagttgcttgtggtcttggcaa
tattcaaaagattagagacggtgagccactcggcggacgtagcctcgcaaccgatgattt
tacgactttagaagatgatgactttctagcataaggagcgtgagttaattatggaaattg
ttatagcggtttttatttcagtgtttataggagtattacttcttgattttacggtaaaga
aactcgtgagtctttacgttgatattaaacacattctaaataggaattagaagattcctg
aaaaacaggatttagaagattctataagtggggtggcaggttttctgtcacctcttttat
taacttggaggtggtgtaatttggaaaatttgagtgtggatttggagacgttttcgagtg
taaatcttggtaaatgtggggtttacaagtacgcagaatcagaggattttgaaatactgc
tttttggctacagtgtggacggtagtgaagttcaggtcgttgacttagcacaaggtgaaa
ccatacccgaggttgtgctttctgctttaacagatgaaacggtgaccaagtgggcgttta
acgctcagtttgaaagaatctgcctatcacgctatttgcgagataaaggcatcaatgtta
accctggtcagacaggaaaaagtgaaggcttgtttttaaacccaagctcgtggcattgca
caatgatctggtcagccaccctggggcttcccatgtcgcttgaaaacgtgggaatagtac
tgggccttgataagcagaagctcactgagggtaagaatcttattaaatacttctgcttac
cgtgtaatcctacgaaagtaaacggtggaagaacaagaaacaagtatttccacgataagg
aaaagtgggagcagtttaaatcgtataacaagcgtgatgtggaagttgagatgagtattc
aagaaaagctctcacgctttcccgtgccggactttttatggcaggagttttatctcgacc
aagagattaacgaccgtgggataggaatagattctcttttcgttgagtcagccataaaac
tcgacttagaggtgaaaacgcatcttatgagtgagcttaagcgtgttacgggtttagaaa
acccgaactctgtgttacagatgcgctcttggcttaaaaagcatggtcttgaaatggagt
cgcttggtaaaaaagaagtcgctaaagagcttaaaacagtgggtaaagagttggcggaag
ttttacggcttcgtcagcagcttgctaaatcctcggtgaaaaagtatacggcgatgaaaa
acgctgcctgtatggattatcgggagcgtggcatgtttcgcttctatggggcaaaccgta
caggaaggtttgcgggaaggcttgtgcaattacaaaacctgccacaaaaccatctgcctg
atttggcggaggctagaagtcttgttaaacaaggaaatgttgaagctttggaaatgcttt
atgaggatattcctgatactttatcccagcttattcgcactgcttttattccacgcacgg
gattgaagtttattgtcgcagacttttcagcgatcgaagcgagagtcttggcttggcttg
caggtgaaaaatggcgtatgcgagtattcgcggaaggtaaagacatttactgctcgtcag
catctcaaatgtttagtgtgcctgttgaaaagcacggagtaaacgggcacctgcggcaga
aaggtaagatagcggagctcgctcttggatatggcggctctgttggtgcgttaaaagcca
tgggagcgctcgacatgggtcttaccgaggatgagctgcagcctcttgttgatgcgtgga
gatcatctaacccgatggttacaacactgtggtgggatgtggacagagcggtaaaacagt
gtgtacacgaacacgtatctgttcgaacacacaatatagtgttcacttacaagagtgggt
ttcttatcatcaaactgccttcgaaaagatgcctttactatgtgaagccacgtgtggaag
aaaacaagtatggtggtgaatcggtcacatatgagggtgtgggatctactaaaaaatggg
agcggctggaaagctacggtcctaaattcgtagaaaacattacgcaagctatagctcgtg
acatcctcatctatgctatgcaaacgctgaaagaatatcgcatcgtcgcgcacgtgcatg
atgaagccattatcgaaaccgataaaagcgtgagtgttcaaagcgtgtgtgagctaatgg
gaagaacaccaccttgggcagaaggtttacttcttagagctgacggctacgagtgcgagt
tttacaaaaaagattaaaaaaattttaggagcagggttaaaaacctgctctttttctttg
cctgtgatttagaaggtaataccgccttcagaaaaaatcataggaggtaattttatgaat
gaattacaagtatttaagaatgtagagcttggctctgttcgcacaacagtagtagatggt
atcccatattttgtgggcaaggacgtggctgagattcttggttatcgtgatacatctgat
gcactgaaaaggcatgtagatgaagatgataagctgactcggtgtttcaccgactcaggt
cagaaccgagaaatgtatgttattaacgagtctggtctttacagtcttattcttagaagt
cagctccctaaagcgtgtcagtttaaacgatgggttacatcacaggttcttccgagtatc
cgtaagcacggtatgtatgcgacagatgagcttatcaacaatcctgatatggctatcgct
gtttttaacgcattgaaagaagagcgtgctaaaagag


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
12 fig|682148.3.peg.1119 Phage protein
8 fig|682148.3.peg.1120 Phage protein
4 fig|682148.3.peg.1122 Phage antirepressor protein
11 fig|682148.3.peg.1124 DNA primase, phage associated
10 fig|682148.3.peg.1126 DNA helicase, phage-associated


  Attributes

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  Protein Families

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