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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|682148.3.peg.1120: Gardnerella vaginalis 5-1

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NCBI Taxonomy Id: 682148

Current Assignment: Phage protein
Translate Function Assignments



Context on contig NZ_ADAN01000092 from base 143 to 8678 (8536 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1117 143 622 480 +           hypothetical protein locus|GV51_1079, protein_id|ZP_06977380.1, gi|298253791
1118 915 1223 309 + 292         rRNA biogenesis protein rrp5, putative locus|GV51_1080, protein_id|ZP_06977381.1, gi|298253792
1119 1180 2346 1167 + -44 8     Phage protein locus|GV51_1081, protein_id|ZP_06977382.1, gi|298253793
1120 2351 2899 549 + 4       Phage protein locus|GV51_1082, protein_id|ZP_06977383.1, gi|298253794
1121 3126 5102 1977 + 226 13     FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7) locus|GV51_1084, protein_id|ZP_06977385.1, gi|298253796
1122 5200 5991 792 + 97         Phage antirepressor protein locus|GV51_1085, protein_id|ZP_06977386.1, gi|298253797
1123 6242 6358 117 + 250         hypothetical protein locus|GV51_1086, protein_id|ZP_06977387.1, gi|298253798
1124 6351 8678 2328 + -8 6     DNA primase, phage associated locus|GV51_1087, protein_id|ZP_06977388.1, gi|298253799

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|682148.3.peg.1120 Phage protein
MSKLNNTKVITGKNTRLSYFNGWEPKSINGGPEKYSVSLLIPKSDVETVNAIEKAIDAAI
EEGVGKFGGKKPNKAALKTPLRDGDIERDDEAYKGHYFINANSTTAPQIVDKQVKPIMDR
SEVYSGCYARVSINFYAFNSNGNKGVACGLGNIQKIRDGEPLGGRSLATDDFTTLEDDDF
LA

MD5 = abd4c5d38b6f5c0dc80cf57c41efaddb


  DNA Sequence

>fig|682148.3.peg.1120 Phage protein
atgtctaaattaaataacacgaaggttattacaggtaagaacacgcgtctttcctatttc
aatggttgggagccaaagtctattaacggcggccctgaaaaatatagtgtttcactgctt
atccctaaaagtgatgttgaaacagtaaacgctattgagaaagctattgatgctgcgatt
gaggaaggtgtcggtaagttcggtggtaaaaaaccaaacaaggctgctcttaaaacacca
ctcagggacggggatattgagcgtgatgatgaagcgtataaaggacattactttattaac
gcgaactcaaccacggctccgcagattgtagacaagcaggtaaaaccaatcatggatcgc
agtgaagtgtattcaggctgctatgcgagggtttccatcaatttttacgcgtttaactct
aacggtaataagggagttgcttgtggtcttggcaatattcaaaagattagagacggtgag
ccactcggcggacgtagcctcgcaaccgatgattttacgactttagaagatgatgacttt
ctagcataa


  DNA with Flanking Sequence

>fig|682148.3.peg.1120 Phage protein
agccggtgactggtgcaggttttgcagggcaaaagcagtatgcagaaagcgtgccgagga
aaatctaaagcttgcagaatttgagttcaaaccgccttctgttttaacggatagtgagat
tgaagaagtgctcacgcttattccacagttaacaaagtgggctgatgatgttttagcgta
cgccacagattccgctattaaccacggtaaagagtggagcggtttcaaactcgtggaagg
acgttctgttcgtaagtttaaggatgagacagcggttattgagaaagcgaaagctcatgg
ctttaccgacattttcaaaactagtcttatcggtttaacggaaatgcaaaagatgatggg
caagaaaaaatttgaggatattctgggcgacctcgttataaaaccgtccggaaaacttac
gctcgtaccggactcggataagcgggcaaaagttaacgtaacaaatgtaaaccaagaatt
caaaaaggagaattagtattatgtctaaattaaataacacgaaggttattacaggtaaga
acacgcgtctttcctatttcaatggttgggagccaaagtctattaacggcggccctgaaa
aatatagtgtttcactgcttatccctaaaagtgatgttgaaacagtaaacgctattgaga
aagctattgatgctgcgattgaggaaggtgtcggtaagttcggtggtaaaaaaccaaaca
aggctgctcttaaaacaccactcagggacggggatattgagcgtgatgatgaagcgtata
aaggacattactttattaacgcgaactcaaccacggctccgcagattgtagacaagcagg
taaaaccaatcatggatcgcagtgaagtgtattcaggctgctatgcgagggtttccatca
atttttacgcgtttaactctaacggtaataagggagttgcttgtggtcttggcaatattc
aaaagattagagacggtgagccactcggcggacgtagcctcgcaaccgatgattttacga
ctttagaagatgatgactttctagcataaggagcgtgagttaattatggaaattgttata
gcggtttttatttcagtgtttataggagtattacttcttgattttacggtaaagaaactc
gtgagtctttacgttgatattaaacacattctaaataggaattagaagattcctgaaaaa
caggatttagaagattctataagtggggtggcaggttttctgtcacctcttttattaact
tggaggtggtgtaatttggaaaatttgagtgtggatttggagacgttttcgagtgtaaat
cttggtaaatgtggggtttacaagtacgcagaatcagaggattttgaaatactgcttttt
ggctacagtgtggacggtagtgaagttcaggtcgttgacttagcacaaggtgaaaccata
cccgaggttgtgctttctgctttaacagatgaaacggtgaccaagtgggcgtttaacgct
cagtttgaaagaatctgcctatcacgctatttgcgagataaaggcatca


  Assignments for Essentially Identical Proteins

Id Organism Who ASSIGN Assignment
fig|682147.3.peg.127 Gardnerella vaginalis AMD FIG   Phage protein


  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
8 fig|682148.3.peg.1119 Phage protein
13 fig|682148.3.peg.1121 FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7)
6 fig|682148.3.peg.1124 DNA primase, phage associated


  Attributes

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  Protein Families

No protein families found

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