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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|682148.3.peg.1118: Gardnerella vaginalis 5-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 682148

Current Assignment: rRNA biogenesis protein rrp5, putative
Translate Function Assignments



Context on contig NZ_ADAN01000092 from base 143 to 5991 (5849 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1117 143 622 480 +           hypothetical protein locus|GV51_1079, protein_id|ZP_06977380.1, gi|298253791
1118 915 1223 309 + 292       rRNA biogenesis protein rrp5, putative locus|GV51_1080, protein_id|ZP_06977381.1, gi|298253792
1119 1180 2346 1167 + -44 5     Phage protein locus|GV51_1081, protein_id|ZP_06977382.1, gi|298253793
1120 2351 2899 549 + 4         Phage protein locus|GV51_1082, protein_id|ZP_06977383.1, gi|298253794
1121 3126 5102 1977 + 226 5     FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7) locus|GV51_1084, protein_id|ZP_06977385.1, gi|298253796
1122 5200 5991 792 + 97         Phage antirepressor protein locus|GV51_1085, protein_id|ZP_06977386.1, gi|298253797

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|682148.3.peg.1118 rRNA biogenesis protein rrp5, putative
MKKEILREVIKDLENLTAHLKTLFDDAGASGAGCKETAPNNKGSVKKVSLEDVRAVLAKL
SQMGKTADVKKLIVKHGAQKLSDVPESEYESLLHEAEGIKGD

MD5 = 6cc3fc1330cbc9062b67b7e495a9ddab


  DNA Sequence

>fig|682148.3.peg.1118 rRNA biogenesis protein rrp5, putative
gtgaaaaaggaaatattgagagaagttatcaaagacttggaaaacttaacagctcatctt
aaaacgctgtttgatgatgctggtgcttctggtgctggttgtaaagaaacagctcctaat
aataaggggtctgttaaaaaggtgagtttggaggatgtgcgagcggttttagcaaaactt
agccagatgggaaagacagctgatgtgaagaaactcatcgttaagcacggtgcgcaaaag
ctatcggatgttcctgaaagcgagtatgagagcctattgcatgaagcggagggaattaaa
ggtgactaa


  DNA with Flanking Sequence

>fig|682148.3.peg.1118 rRNA biogenesis protein rrp5, putative
ttttattaccaacgattatggttttgaatggtcagaagaaatggagcatgcgttttcaac
gcttactgacaagcagcgtcaggttattcgtttgatgtttattgaaggatacactcagtc
agagattgcaagcatgcttggtatctcgtctgctggtgtgaaaaagcatctggataaggc
tctcgaaaagcttagaaaaacgcgttaaaaaattctagaaattttatttggaggaggtta
aaaactcctcctttttctttgcctgtgatgtgtaaggaagaaaccccttatagaaaggag
gcaaaactcgtgaaacacaagatcgttattaacgtcaccggtgaaaacggtgagaagaaa
caggttctacgtggagctgtgatgcgattacctcaacggtttatccgctggctgtttggt
gattactcgcaagtctacctattagatcctggaaagagtgttcagtcagttgatgtcaaa
gaagtttaaggaggaaaaccgtgaaaaaggaaatattgagagaagttatcaaagacttgg
aaaacttaacagctcatcttaaaacgctgtttgatgatgctggtgcttctggtgctggtt
gtaaagaaacagctcctaataataaggggtctgttaaaaaggtgagtttggaggatgtgc
gagcggttttagcaaaacttagccagatgggaaagacagctgatgtgaagaaactcatcg
ttaagcacggtgcgcaaaagctatcggatgttcctgaaagcgagtatgagagcctattgc
atgaagcggagggaattaaaggtgactaagcatgctttactttccccatcttctgctcac
aggtggattaagtgtactccgagtgctgttttagaagaaaagtttgaaaacactacttct
gctgcagcaaaggaaggaacggcagcacacgcgtggtgtgagtacaagctgaataagctt
cttaaccgtccgtgtgaaaaaccgtcaacagagtatgactcaaacgagatgcaggaatgc
tcggatgcttacgtggatttcgtaatggaaaaatacgaacaggcaaaacttaactgtcaa
gatcctatccttctcatcgagcagaaagttgatttttcagcttacgtgccggacgggttt
ggtacagcggactgcattattgtaggcgataaaacgctgcaggttatcgactttaagtac
ggtcaaggcgtgctggttgatgcttacgagaatcctcagatgaaatgctacgcgcttgga
gctttaacgcttttcgacagcttgtatgagattcaaactgttgagatga


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

Score Peg Function
5 fig|682148.3.peg.1119 Phage protein
5 fig|682148.3.peg.1121 FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7)


  Attributes

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  Protein Families

No protein families found

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