The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
The SEED


FIG search

Protein fig|682148.3.peg.1117: Gardnerella vaginalis 5-1

This feature in The SEED Viewer

NCBI Taxonomy Id: 682148

Current Assignment: hypothetical protein
Translate Function Assignments



Context on contig NZ_ADAN01000092 from base 143 to 5991 (5849 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
1117 143 622 480 +           hypothetical protein locus|GV51_1079, protein_id|ZP_06977380.1, gi|298253791
1118 915 1223 309 + 292         rRNA biogenesis protein rrp5, putative locus|GV51_1080, protein_id|ZP_06977381.1, gi|298253792
1119 1180 2346 1167 + -44         Phage protein locus|GV51_1081, protein_id|ZP_06977382.1, gi|298253793
1120 2351 2899 549 + 4         Phage protein locus|GV51_1082, protein_id|ZP_06977383.1, gi|298253794
1121 3126 5102 1977 + 226         FIG006036: phage encoded DNA polymerase I (EC 2.7.7.7) locus|GV51_1084, protein_id|ZP_06977385.1, gi|298253796
1122 5200 5991 792 + 97         Phage antirepressor protein locus|GV51_1085, protein_id|ZP_06977386.1, gi|298253797

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|682148.3.peg.1117 hypothetical protein
MDDSEVYYNNKNLRPARTAEEKAEIEAWKEKYIKRFEERYGYKPNKDDVDYAANKHFLPN
YNSSIDFDADGELEVDKSHLAEALSTTDDYGFITNDYGFEWSEEMEHAFSTLTDKQRQVI
RLMFIEGYTQSEIASMLGISSAGVKKHLDKALEKLRKTR

MD5 = 88ef14850da3dcf332f81114ce4299b8


  DNA Sequence

>fig|682148.3.peg.1117 hypothetical protein
atggatgacagcgaggtttactacaacaataagaatctgcgtcctgctagaactgctgaa
gaaaaagctgagattgaagcgtggaaagagaagtacatcaaacgtttcgaagaaagatac
ggctacaaacccaacaaagacgacgttgactacgctgctaacaagcatttcctacccaac
tataattcctcgattgactttgatgcagatggcgagcttgaagtagataaaagtcatctt
gctgaagctctcagtactactgatgattatggttttattaccaacgattatggttttgaa
tggtcagaagaaatggagcatgcgttttcaacgcttactgacaagcagcgtcaggttatt
cgtttgatgtttattgaaggatacactcagtcagagattgcaagcatgcttggtatctcg
tctgctggtgtgaaaaagcatctggataaggctctcgaaaagcttagaaaaacgcgttaa


  DNA with Flanking Sequence

>fig|682148.3.peg.1117 hypothetical protein
caaaactaatagcaacgatcgagcaacatataagtatacaagttgtgttcgtaatgaaga
tggtagttatagtgaagaaactatcgagattaagccgggcgaaaatggtgtcactgaagc
ggatattaagatgcttcactcaatggatgacagcgaggtttactacaacaataagaatct
gcgtcctgctagaactgctgaagaaaaagctgagattgaagcgtggaaagagaagtacat
caaacgtttcgaagaaagatacggctacaaacccaacaaagacgacgttgactacgctgc
taacaagcatttcctacccaactataattcctcgattgactttgatgcagatggcgagct
tgaagtagataaaagtcatcttgctgaagctctcagtactactgatgattatggttttat
taccaacgattatggttttgaatggtcagaagaaatggagcatgcgttttcaacgcttac
tgacaagcagcgtcaggttattcgtttgatgtttattgaaggatacactcagtcagagat
tgcaagcatgcttggtatctcgtctgctggtgtgaaaaagcatctggataaggctctcga
aaagcttagaaaaacgcgttaaaaaattctagaaattttatttggaggaggttaaaaact
cctcctttttctttgcctgtgatgtgtaaggaagaaaccccttatagaaaggaggcaaaa
ctcgtgaaacacaagatcgttattaacgtcaccggtgaaaacggtgagaagaaacaggtt
ctacgtggagctgtgatgcgattacctcaacggtttatccgctggctgtttggtgattac
tcgcaagtctacctattagatcctggaaagagtgttcagtcagttgatgtcaaagaagtt
taaggaggaaaaccgtgaaaaaggaaatattgagagaagttatcaaagacttggaaaact
taacagctcatcttaaaacgctgtttgatgatgctggtgcttctggtgctggttgtaaag
aaacagctcctaataataaggggtctgttaaaaaggtgagtttggaggatgtgcgagcgg
ttttagcaaaacttagccagatgggaaagacagctgatgtga


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link


  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key
Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer



Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options


|   Psi-Blast  |   TMpred  |   TMHMM  |   Gram negative PSORT  |   Gram negative SignalP  |   Gram positive PSORT  |   Gram positive SignalP  |   LipoP  |   Radar  |   PPSearch  |   Gram negative CELLO  |   Gram positive CELLO  |   ProDom  |   PDB  |   RNAFold  |

> Show tool descriptions


FIG search