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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|670904.4.peg.698: Escherichia coli OK1180

This feature in The SEED Viewer

NCBI Taxonomy Id: 670904

Current Assignment: Roi protein
Translate Function Assignments


Context on contig ADUQ01000038 from base 16 to 4234 (4219 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
697 144 16 129 -           hypothetical protein  
698 954 475 480 - 330         Roi protein locus|ECOK1180_0724, protein_id|EFZ66013.1, gi|323180465
699 1198 1037 162 - 82         Phage DNA binding protein Roi locus|ECOK1180_0725, protein_id|EFZ66014.1, gi|323180466
700 1977 1273 705 - 74         putative antirepressor protein locus|ECOK1180_0726, protein_id|EFZ66015.1, gi|323180467
701 2958 2431 528 - 453         Phage DNA N-6-adenine methyltransferase locus|ECOK1180_0727, protein_id|EFZ66016.1, gi|323180468
702 3068 2955 114 - -4         Protein NinB  
703 3261 3061 201 - -8         Protein NinB locus|ECOK1180_0729, protein_id|EFZ66018.1, gi|323180470
704 3595 3359 237 - 97         hypothetical protein locus|ECOK1180_0730, protein_id|EFZ66019.1, gi|323180471
705 3821 3606 216 - 10         hypothetical protein  
706 4234 3998 237 - 176         hypothetical protein locus|ECOK1180_0731, protein_id|EFZ66020.1, gi|323180472

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|670904.4.peg.698 Roi protein
MSPEFTARLVDRWRELEGATAKIPQTFSEALRLAADLEDQKAELEKQLALAAPKVEFADR
VGEASGILIGNFAKVVGIGPNKRFAWMRDHKILIASGARRNVPMQEYMDRGYFTVKETAV
NTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEAA

MD5 = 81f252a67b1ac6660c391a6538de32fb


  DNA Sequence

>fig|670904.4.peg.698 Roi protein
ttgtcgccggaattcaccgctcgccttgttgaccgctggcgagaactcgaaggggcaacc
gcgaaaataccacaaaccttttctgaggcattgcgccttgcggccgaccttgaagaccag
aaggctgaactggagaaacagcttgctctcgcagcacctaaagttgagtttgccgatcga
gttggcgaggccagcggaattttgattggaaactttgcaaaggttgttggtattggtcca
aacaaacggtttgcgtggatgcgcgatcacaaaatccttattgcttcaggtgcccggcgc
aatgtgccaatgcaggaatatatggatcgcggctatttcacagtgaaagaaacagcggtc
aatacaaatcacggaatacagatatcgttcaccacaaaaatcaccgggcgtggtcaacag
tggctgacaagaaagctgctagataacggaatgcttaaagtaacaggggaggctgcttaa


  DNA with Flanking Sequence

>fig|670904.4.peg.698 Roi protein
actattccggcagatgctacgactacggtcatgagttttcgtatgttatcggaatggcga
gagatgttttaatcaaccacacacgagatgttgatattaatgagccagacggaccaacga
acctttccgcatgggtaaggcttaagaacaaagagttgccgccttcactgcatcgctact
gacaattgacaacttaacaaacccagcttcggctgggttttttattactgaattttcaat
gtgagaggacatgacaatgaatgagctgataaatagcagtatcatcaaaatgacaagcat
tgaaatcgctgagttagtgggaagtcgtccagataacgtaaaaatatcaatagagcgcct
ggctaaatctggagttattcaacttcctgcattgcaggttttcgaaaaaaatcaataact
tagggctgcgccgtagtgtcgaggcttacgtcttcgaaggcgaacaaggtaagcgcgata
gcattattgtcgttgcccagttgtcgccggaattcaccgctcgccttgttgaccgctggc
gagaactcgaaggggcaaccgcgaaaataccacaaaccttttctgaggcattgcgccttg
cggccgaccttgaagaccagaaggctgaactggagaaacagcttgctctcgcagcaccta
aagttgagtttgccgatcgagttggcgaggccagcggaattttgattggaaactttgcaa
aggttgttggtattggtccaaacaaacggtttgcgtggatgcgcgatcacaaaatcctta
ttgcttcaggtgcccggcgcaatgtgccaatgcaggaatatatggatcgcggctatttca
cagtgaaagaaacagcggtcaatacaaatcacggaatacagatatcgttcaccacaaaaa
tcaccgggcgtggtcaacagtggctgacaagaaagctgctagataacggaatgcttaaag
taacaggggaggctgcttaatggctaaaccagcgcgaaggaaatgcaaaatctgtaagga
atggtttcacccggcattctcaaatcagtggtggtgcagcccggaacacggaactaaatt
agcactcgaacgacgaaataaagaacgcgaaaaggcggaaaaaacagcagagaagaaacg
acgacgagaggagcagaaacagaaagataaaattaagattcgaaaactcgccttaaagcc
ccgcagttactggattaaacaagcccaacaagccgtaaacgccttcatcagagaaagaga
ccgcgacttaccatgtatctcgtgcggaacgctcacgtctgctcagtgggatgccggaca
ttaccggacaactgctgcggcacctcaactccgatttgatgaacgcaatattcacaagca
atgcgtggtgtgcaaccagcacaaaagcggaaatctcgttccgtatcgcgtcgaactgat
taatcgcatcgggc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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