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SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
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Protein fig|575604.3.peg.976: Lactobacillus gasseri SV-16A-US

This feature in The SEED Viewer

NCBI Taxonomy Id: 575604

Current Assignment: putative integrase
Translate Function Assignments



Context on contig ADDY01000015 from base 122486 to 134687 (12202 bp)

Fid Start End Size
(nt)
  Gap Find
best
clusters
Pins Fc-sc SS Ev Function Aliases
967 123289 122486 804 -           Lj928 prophage protein  
968 124182 123292 891 - 2         Lj928 prophage replication protein  
969 124365 124213 153 - 30         Lj928 prophage recombination protein  
970 124797 124513 285 - 147         hypothetical protein  
971 125599 124811 789 - 13         Phage antirepressor protein  
972 125839 125612 228 - 12         hypothetical protein  
973 125989 126597 609 + 149         SOS-response repressor and protease LexA (EC 3.4.21.88)  
974 126608 127201 594 + 10         hypothetical protein  
975 127226 127879 654 + 24         Phage protein  
976 128066 129190 1125 + 186         putative integrase  
977 129900 129304 597 - 113     9: 1 4 9 5 7 10 2 8 6   Dephospho-CoA kinase (EC 2.7.1.24)  
978 130727 129897 831 - -4     1: 3   Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)  
979 133403 130743 2661 - 15         DNA polymerase I (EC 2.7.7.7)  
980 134687 133506 1182 - 102         Diaminopropionate ammonia-lyase (EC 4.3.1.15)  

Annotation History   /   View All Related Annotations Help on Annotations



  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|575604.3.peg.976 putative integrase
MPKQLNKEITKYTLKSGKVRYRFKTYLGMDDSGKRVMVTRQGFKTYQEANAVYKKLRAKG
TQGYTKPKQATVEQVWTLWFDTYKKHAKESTAHKMQQTYDNHVKKDFGNVYIDKIKPAKV
QKWINNLSTVLVRYRPAFNLLNNLINYAIVLGYANINPTKKVIVPAKTSVKKRRDTKNNY
YDSPEQVREFLNAAKKDSEIAYMYFKLLSSTGLRKSEALALKWDDIDFEKNVIHVTKTIN
VGFNNVELIAPPKTKESYRDVPLSKSLKADLMKYRSNIYDFVFCKANGDHLNLATPAHWL
QRIYKNNSNLKQITIHGFRHTFATLMLQPGTGNTPKDVQKILGHSTIDMTLNIYTHESKK
GQQNIIRSIDALNI

MD5 = 86779ad47ca5cebc36a19e335804ab9e


  DNA Sequence

>fig|575604.3.peg.976 putative integrase
atgccaaaacaattgaataaggaaattacaaaatacactttaaaatctgggaaagttaga
tatagatttaaaacatatctaggcatggacgatagtggcaagcgtgttatggttactcgc
caaggctttaaaacatatcaagaagctaatgctgtctataagaaacttcgtgctaaaggt
acccagggatacacaaagcctaagcaagccacggttgaacaagtttggactctctggttc
gatacttacaaaaaacacgcaaaagaatccacagctcataagatgcagcaaacatatgat
aaccatgtaaaaaaagatttcggtaatgtttatattgataaaatcaaacctgctaaagtc
cagaaatggattaataatctatcaactgttttagtaagatatcgaccagcttttaaccta
cttaacaatttaatcaactatgctatcgttctaggctatgcaaatattaatcctactaag
aaagtaattgtccctgctaaaacatctgtaaagaaacgtagagatactaaaaataactac
tatgatagtccagaacaagtaagggaatttttaaatgctgctaaaaaagatagtgaaata
gcatacatgtactttaaacttttaagttcaactggacttagaaaaagtgaagctctagcc
cttaagtgggatgacattgattttgaaaagaatgttattcatgttactaaaaccataaat
gtgggctttaataacgtagaacttattgctccaccaaaaacaaaagaatcatatagagat
gtaccattgtcaaaaagtctgaaagcagacttgatgaagtatcgcagtaatatttatgac
tttgtcttctgtaaagcaaatggagaccaccttaacttagctacaccggcacattggtta
caaaggatttataaaaacaattccaatttaaagcagataaccattcacggctttagacat
acatttgctactcttatgctacagccaggaacaggaaacactcccaaagatgttcaaaaa
attctaggacactcaaccatagatatgactttaaatatttatactcatgaaagtaaaaaa
ggccaacagaacataattcgttccattgacgctttaaacatttaa


  DNA with Flanking Sequence

>fig|575604.3.peg.976 putative integrase
ttattaaatttagaaatagaaaagatgaaaaaatagaatattataaaggcaaaattaaag
gaacagatacagtctatagagaaaacattgttccaaaagctgttgctttagtgaacttaa
ttaatagttttcctcaaaaagctcttaataattctaatgaccagtcttttgatgaatctt
ctccatcagataatcaatcatcccctgctgccgatcccttagacgaaatcaaaaagctca
aaggcttgctagacatgggagcaattacgccagaagagtttgatgccaaaaagaagcagc
tgctaaacttataaaatctgctttttataaaatataaaaaagacctactaatgcaccaac
atcagtaggtcaaacaaatgagctacgccaatagctcatccgtaaactttgaataaaatt
aacaaaaccatcattaaacagttctgctatcttctattttagcagacttttaatgatgcc
aaaataggaggttttttattatgccaaaacaattgaataaggaaattacaaaatacactt
taaaatctgggaaagttagatatagatttaaaacatatctaggcatggacgatagtggca
agcgtgttatggttactcgccaaggctttaaaacatatcaagaagctaatgctgtctata
agaaacttcgtgctaaaggtacccagggatacacaaagcctaagcaagccacggttgaac
aagtttggactctctggttcgatacttacaaaaaacacgcaaaagaatccacagctcata
agatgcagcaaacatatgataaccatgtaaaaaaagatttcggtaatgtttatattgata
aaatcaaacctgctaaagtccagaaatggattaataatctatcaactgttttagtaagat
atcgaccagcttttaacctacttaacaatttaatcaactatgctatcgttctaggctatg
caaatattaatcctactaagaaagtaattgtccctgctaaaacatctgtaaagaaacgta
gagatactaaaaataactactatgatagtccagaacaagtaagggaatttttaaatgctg
ctaaaaaagatagtgaaatagcatacatgtactttaaacttttaagttcaactggactta
gaaaaagtgaagctctagcccttaagtgggatgacattgattttgaaaagaatgttattc
atgttactaaaaccataaatgtgggctttaataacgtagaacttattgctccaccaaaaa
caaaagaatcatatagagatgtaccattgtcaaaaagtctgaaagcagacttgatgaagt
atcgcagtaatatttatgactttgtcttctgtaaagcaaatggagaccaccttaacttag
ctacaccggcacattggttacaaaggatttataaaaacaattccaatttaaagcagataa
ccattcacggctttagacatacatttgctactcttatgctacagccaggaacaggaaaca
ctcccaaagatgttcaaaaaattctaggacactcaaccatagatatgactttaaatattt
atactcatgaaagtaaaaaaggccaacagaacataattcgttccattgacgctttaaaca
tttaattctgtgctttttctgtggaaggtaatcaaataaagttaagaatgcttgatatat
agcggtttacataaggtaaattgcttttttaatggagttttggacattccaattttctct
acctgcctatcttttgtaataaatcagataatcttttctctaagtcatctattgtaccag
tattagctactacataggtagctcttttttctttttcgcttagtggcatttgattattta
ttctaaccaaagcttcttctttagtgaaattatttcgtttcatcagacgtttaacctgca
gttttggtgaaatagaaataaccaaaacgccatcgcataagctttcaaaaccagattcaa
atagtaaaggcacatcaactacaactaatttttcttgatttaaacggtatcgctccattt
gttgtttaattttctgatgaacaagtggatgagttatctcatttaattttttcagcttag
ttttatcattaaaaactattccacc


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

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  Functional Coupling

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  Attributes

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  Protein Families

No protein families found

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