The SEED: an Annotation/Analysis Tool Provided by FIG
[ Subsystem Forum | Essentiality Data | FIG Tutorials | Peer-to-peer Updates | (New) Clearinghouse | SEED Control Panel | NMPDR | SEED Wiki]
[GOLD | "Complete" Genomes in SEED | ExPASy | IMG | KEGG | NCBI | TIGR cmr | UniProt | Report "Bugz"]

SEED version cvs.1555556707 (3/17/2019 22:5:7) on gum.mcs.anl.gov
 The SEED


FIG search

Protein fig|575604.3.peg.971: Lactobacillus gasseri SV-16A-US

This feature in The SEED Viewer

NCBI Taxonomy Id: 575604

Current Assignment: Phage antirepressor protein
Translate Function Assignments


Context on contig ADDY01000015 from base 120037 to 130727 (10691 bp)

Fid Start End Size
(nt)		   Gap Find
best
clusters		 Pins Fc-sc SS Ev Function Aliases
962 120306 120037 270 -           hypothetical protein  
963 120710 120324 387 - 17         Lj928 prophage protein  
964 121510 121208 303 - 497         hypothetical protein  
965 122364 121774 591 - 263         Lj965 prophage replication protein  
966 122336 122494 159 + -29         hypothetical protein  
967 123289 122486 804 - -9         Lj928 prophage protein  
968 124182 123292 891 - 2         Lj928 prophage replication protein  
969 124365 124213 153 - 30         Lj928 prophage recombination protein  
970 124797 124513 285 - 147         hypothetical protein  
971 125599 124811 789 - 13         Phage antirepressor protein  
972 125839 125612 228 - 12         hypothetical protein  
973 125989 126597 609 + 149         SOS-response repressor and protease LexA (EC 3.4.21.88)  
974 126608 127201 594 + 10         hypothetical protein  
975 127226 127879 654 + 24         Phage protein  
976 128066 129190 1125 + 186         putative integrase  
977 129900 129304 597 - 113     9: 1 4 9 5 7 10 2 8 6   Dephospho-CoA kinase (EC 2.7.1.24)  
978 130727 129897 831 - -4     1: 3   Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)  

Annotation History   /   View All Related Annotations Help on Annotations


  Subsystems in Which This Protein Plays a Role

This PEG is currently not present in any subsytem.

  Protein Sequence

>fig|575604.3.peg.971 Phage antirepressor protein
MNEIINIKVQNDQQLVSARDLHKTLGAKKKYSEWISQNVAGFIVGVDFTRSPESYLVKSG
NGTVRKYDDVLLTIETAKQICMMSKTSRGKEVRKYFIQVEKNWNNPDMIMQRALNIASSR
VKLLENKNKELEDVNAKQAEKIAKDADDVVFAKAIRYSHHAITIAELADILTQNGFVIGR
NQLFQLLRHAKYLSHQRSTWNLPMTDKVKRGYFRITHRLTRDNRPYSQVFVTPKGQKHII
NKALRGKFDDIYQDVMVTTFDV

MD5 = 9b1aa2a4c663b3681619be521a9d4360


  DNA Sequence

>fig|575604.3.peg.971 Phage antirepressor protein
atgaacgaaataattaatataaaagtccaaaacgatcagcaacttgtttcagctagagat
ttgcataaaactttaggagctaaaaagaagtattctgaatggatttctcaaaatgtagca
ggttttatagtgggtgtagattttacgaggtcacctgaaagttacctcgttaaaagtggc
aatggaacagtacgaaaatacgatgatgttcttttaacaattgaaacagcgaaacaaatt
tgcatgatgtcaaaaacatcaagaggtaaagaagttcgcaagtactttattcaagttgaa
aagaactggaacaatccagatatgattatgcagcgtgcattaaacatcgcaagcagtcgt
gtaaagctacttgaaaataagaataaggaacttgaagacgtcaatgcaaagcaggcagaa
aaaattgccaaagatgctgacgatgtagtttttgcaaaagctattagatacagccaccat
gcaattactattgctgaattagctgacatcttaacacaaaatggctttgtaatcggccgt
aatcaactatttcaattgttaagacatgctaaatatttatcacaccaaagaagtacctgg
aacttacctatgaccgacaaggtcaaaagaggatatttccgaataacccacagacttaca
agagataatcgtccatattcacaagtgtttgtgacaccgaaaggacagaaacacatcatc
aataaggctctacgtgggaagtttgatgatatttatcaagacgttatggtaaccacgttt
gatgtttag


  DNA with Flanking Sequence

>fig|575604.3.peg.971 Phage antirepressor protein
ggacacacctgatttggccattccaacgcgtctagctaattcactaattgatacgtcttg
ctcttctcttagttgatttaaataatcaattatttcttcactactgcgcattatttcacc
tcatctcttaatactaataatactccacttgttgacaaaaaaatacattttttatctttt
tttatgttttttgttgacaaaagaatacgataagaatattatatagttgttcttcaaagt
gaacgaattgaggtggaataatgaagtttgatttgcaacgtttaaaaggtgagcgtgtag
cacgaggaattacacaagctcaaatggcacgtaaaataggcattagtacgaatgcctatt
ggagaaaggagaatggagaacgtgacattggtatggaagaatttgtcaagatcttaagtg
tactaggtttcgaaaagaaacaaatttcgcttttttttgcaaaagacgttcacaatagtg
aacattaaggagatgaacaaatgaacgaaataattaatataaaagtccaaaacgatcagc
aacttgtttcagctagagatttgcataaaactttaggagctaaaaagaagtattctgaat
ggatttctcaaaatgtagcaggttttatagtgggtgtagattttacgaggtcacctgaaa
gttacctcgttaaaagtggcaatggaacagtacgaaaatacgatgatgttcttttaacaa
ttgaaacagcgaaacaaatttgcatgatgtcaaaaacatcaagaggtaaagaagttcgca
agtactttattcaagttgaaaagaactggaacaatccagatatgattatgcagcgtgcat
taaacatcgcaagcagtcgtgtaaagctacttgaaaataagaataaggaacttgaagacg
tcaatgcaaagcaggcagaaaaaattgccaaagatgctgacgatgtagtttttgcaaaag
ctattagatacagccaccatgcaattactattgctgaattagctgacatcttaacacaaa
atggctttgtaatcggccgtaatcaactatttcaattgttaagacatgctaaatatttat
cacaccaaagaagtacctggaacttacctatgaccgacaaggtcaaaagaggatatttcc
gaataacccacagacttacaagagataatcgtccatattcacaagtgtttgtgacaccga
aaggacagaaacacatcatcaataaggctctacgtgggaagtttgatgatatttatcaag
acgttatggtaaccacgtttgatgtttagtaaggagtttgagatggatttaataaattca
aacgctcttcgctcaattattagagaagaaataccggacgtgagtaacaatttgctaacg
aaaaaagatgctaaatctttgattaaaaaatacgcatcacaagggtatttcaatgtaggg
gatgctgctaactattgcggagttagccgaagtacttttgataaatggcgaaaagatgga
ataattacaccccgcattgtttgcggagtagttagatatgcaagagcagatttagatagg
atgatgagcaacgatgagatggtttaacaaaatagtaaataattggtttcacattgattt
gaattgtagagaaacagattttttagcactaggcggatttattggggtatttatcacgtt
catattcacaatgtttaccgcgatttttccgaatatttaaggagggtgaatgaaatgagt
ttagaaacacgattaatcagtagcagcaatgcttttttcacaaaagaaa


  Assignments for Essentially Identical Proteins

No essentially identical proteins found

  Links to Related Entries in Other Sites

This PEG has no links.
add a new link

  Functional Coupling

Score Peg Function


  Attributes

Help on Attributes

Key
Link Explains Key		 Value


  Protein Families

No protein families found

Compare Regions

Compared Regions in SeedViewer

Similarities

Max sims:    Max expand:    Max E-val:       Show Env. samples:    Show aliases:
   Sort by    Group by genome:

Help with SEED similarities options
Tool Description
General Tools
Psi-Blast NCBI's psi-blast is used to locate distant similarities
Transmembrane Predictions
TMpred Tool for Predicting Transmembrane regions
TMHMM Prediction of transmembrane helices in proteins
Protein Signals for Gram negative bacteria
Gram negative PSORT Prediction of protein localization sites
Gram negative SignalP Predicts the presence and location of signal peptide cleavage sites
Protein Signals for Gram positive bacteria
Gram positive PSORT Prediction of protein localization sites
Gram positive SignalP Predicts the presence and location of signal peptide cleavage sites
Other useful tools
LipoP Prediction of lipoproteins and signal peptides in Gram negative bacteria
Radar Rapid Automatic Detection and Alignment of Repeats in protein sequences
PPSearch Search for protein motifs against all patterns stored in the PROSITE pattern database
Gram negative CELLO Subcellular localization predictor at National Chiao Tung University
Gram positive CELLO Subcellular localization predictor at National Chiao Tung University
ProDom A comprehensive set of protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases
PDB An Information Portal to Biological Macromolecular Structures
For Specific Organisms
RNAFold The RNAfold web server will predict secondary structures of single stranded RNA or DNA sequences.

< Hide tool descriptions
FIG search